Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0242 ATGCCTTCAGCTCAAGATCCATTCTATGTTGTGAAGGAGGAGATTCAAGAATCTATTGATAAACTGCAATCTACTTTTCGCCAATGGGAAAAAGCTGCTGATGATGGCGAGCGATCCAATCTTTCAAAGGAAGTTCTTACTAGCTGTGAAAGCATTGATTGGCAGGTAGATGAATTGGACAAAGCAATTTCTGTGGCCTCTAGAGATCCTTCTTTGTATGGCATTGATGAAGTGGAGCTTGAGAACAGGAGGAGGTGGACCAGTGATGCTCGTAGCAAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCAGGAACACGCTCAAATATAGCAAACAATGCTAATCTAAATGGGATGCGCAGGGAATTAATGAGGCTTACTAATTCTCATCAATCTGCGTCTGACCCATATGCTACCCAGGATAACGACGATTTTATAGAATCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAATTGGACGAACTCAGTATAAGTGTACAAAGAATCGGAGATGTTGGACTTACTATACATGACGAGCTCGTTGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATCCTGGGTTTGCTGGTTCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG 738 0.4228 MPSAQDPFYVVKEEIQESIDKLQSTFRQWEKAADDGERSNLSKEVLTSCESIDWQVDELDKAISVASRDPSLYGIDEVELENRRRWTSDARSKVSTAKKAVEAGTRSNIANNANLNGMRRELMRLTNSHQSASDPYATQDNDDFIESESDRQMLLIKRQDEELDELSISVQRIGDVGLTIHDELVAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLVLFIFLFILVFFT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0242 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Vra6g0242 245 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Vra6g0242 245 Pfam SNARE domain 190 241 IPR000727 -
Vra6g0242 245 CDD SNARE_Qc 156 213 - -
Vra6g0242 245 Gene3D - 2 104 - -
Vra6g0242 245 PANTHER SYNTAXIN PROTEIN 1 244 - -
Vra6g0242 245 Coils Coil 191 211 - -
Vra6g0242 245 Coils Coil 12 32 - -
Vra6g0242 245 SMART tSNARE_6 148 215 IPR000727 -
Vra6g0242 245 Gene3D - 160 224 - -
Vra6g0242 245 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Vra6g0242 245 PANTHER SYNTAXIN 1 244 IPR045242 -
Vra6g0242 245 SUPERFAMILY SNARE fusion complex 151 215 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0242 53 245 SNARE and Associated Proteins AT1G28490 68.041 4.49e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0242 K08500 - gmx:100793612 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0242 6 1807625 1811218 Vra6g0242 6 1807625 1811218 PCT