Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0237 ATGATGATATCTGGAAGATGTGCAGCTTGCAAGAATCAAAGAAGAAGATGTCCTTCAGATTGCATTTTCTCTCCATACTTTCCTGCCAATGATCCTCAAAGATTTGCTTCTGTTCACAAAATCTATGGTGGCAGTAATGTTGGGAAAATGCTTCAGCAAATTCCACCATACTTACGTGAACAAACTGCAAATTGTTTATACTTTGAAGCACAATGTAGGATTCAAGACCCAGTTTATGGATGTGTTGGGATTATCTCAAAACTGTATGAGCAAATCCGCAATACAGAAATTGAACTTGCTCAAATTCAAACTCAGATTACATGTCGCAAGCTTCAACTCCTGCACCCAAATAATGCAGAAACAAACTTCAACTTGTTGCCAACAGTTCAAGCTCAATCCAGTTTTCAAATACCAGCAGAAAGCACCAACCCTCCACAGTTTCCTTGGTTTAATTAA 456 0.3838 MMISGRCAACKNQRRRCPSDCIFSPYFPANDPQRFASVHKIYGGSNVGKMLQQIPPYLREQTANCLYFEAQCRIQDPVYGCVGIISKLYEQIRNTEIELAQIQTQITCRKLQLLHPNNAETNFNLLPTVQAQSSFQIPAESTNPPQFPWFN* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0237 151 Coils Coil 85 105 - -
Vra6g0237 151 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 2 117 - -
Vra6g0237 151 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vra6g0237 151 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 117 - -
Vra6g0237 151 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0237 Vra-Chr6 1781168 1782667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0237 6 120 AS2 family AT3G26660 57.391 1.41e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra6g0237 LOB 5.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0237 - - ccaj:109810657 223.016