Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0218 ATGGCTCTTGAGAAAACCAGTTTGGATCTCCTTACCAAGAACACAGGTGACAACAAATCAGTTGAAGAAAATGATGCTTTGGAAACTAAGGATGAAAAGAGGTTTGTAGCTTTGGTTACTGAATTGCATCAAGTGAATGCTGAAAATCAAAGATTAAGAGAGTTGATTGATCAGATGAATAATAACAGCAACGCAGTACGCATGCAACTTATCAAGATAACGCAGAAGCAGCATAACTTACGGAAGAATGGAGTGGATGGAGAGAAAGAAGAGATGGTTCCAAGGTCATTTTTAGACATGGGTGTGGCTGAAAAGGATGAGGCTTCGCAGCAATCCTCAGAGGAAAAACTCAGAGAAAGCAAAAGCGTGGTTGATTTGATGCATCGGTGTAAGGGTAATGAGAAAGATGTTGAAGAAAAGTCGGATTGTGGAAGGGAAAGCTCAAAAGCTAGAATGGAAGGTGACCAAGAACTTTCCAACAAAGTTCCTAAATTGGATCAAAATTCAGAAACCTTGTCAATGATCAAGAAAGCCCGTGTGTCAGTTCGAGCAAGATCAGACTCTACAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCAAGGGCCTATTATCGTTGCACAATGAGTACCGGCTGCCCAGTGCGTAAACAAGTACAAAGGTGTGCAGAAGATCGAAGTGTGTTGATCACTACATATGAAGGGCAACATAATCATCCACTTCCTCCCACAGCTCAGGCAATGGCCTCAACCACATCTGCAGCTGCTTCAATGCTTCTTTCTGGATCAATGCCAAGCTCAGATGGCCTAATCAATCCAACCATTTTGGAAAATGCTTCACTTCCATGCTCTCAAAACATGGCTACTCTCTCTGCCTCAGCTCCATTTCCCACCATCACACTCGATCTCACTCAAAATCCTACCAATTCCTCACACCACCAAAGGGATCCACACAACCAACTCAGCCTCCTCTCTCCCCTTTTGGCTCAGAAGTTCATGTCGGTTCCAAAATTATTCGGACACTCACTGTGTGATCAAACTAAGCTTGCTGGCTTACATGAATCTCAGGGAATGGACACTGCAGCTCCATCGTTTGCTAACTCACTGAATGCAGCAACTGCTGCTATCACTGCAGATCCCAATTTCACTGCTGCACTTGTGGCAGCCATAACATCTGTCATGGGAAGTTCACATTCAAACACCAGTGGCACCAGTAACACTACTGGGGATCACCACTGCAATAATAATGCATGA 1284 0.4408 MALEKTSLDLLTKNTGDNKSVEENDALETKDEKRFVALVTELHQVNAENQRLRELIDQMNNNSNAVRMQLIKITQKQHNLRKNGVDGEKEEMVPRSFLDMGVAEKDEASQQSSEEKLRESKSVVDLMHRCKGNEKDVEEKSDCGRESSKARMEGDQELSNKVPKLDQNSETLSMIKKARVSVRARSDSTMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPTILENASLPCSQNMATLSASAPFPTITLDLTQNPTNSSHHQRDPHNQLSLLSPLLAQKFMSVPKLFGHSLCDQTKLAGLHESQGMDTAAPSFANSLNAATAAITADPNFTAALVAAITSVMGSSHSNTSGTSNTTGDHHCNNNA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0218 427 SUPERFAMILY WRKY DNA-binding domain 184 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0218 427 MobiDBLite consensus disorder prediction 406 427 - -
Vra6g0218 427 Gene3D WRKY domain 176 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0218 427 SMART WRKY_cls 191 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0218 427 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 6 414 - -
Vra6g0218 427 Coils Coil 42 69 - -
Vra6g0218 427 MobiDBLite consensus disorder prediction 1 26 - -
Vra6g0218 427 Pfam WRKY DNA -binding domain 193 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0218 427 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 414 IPR044810 GO:0003700
Vra6g0218 427 MobiDBLite consensus disorder prediction 134 159 - -
Vra6g0218 427 ProSiteProfiles WRKY domain profile. 186 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0218 Vra-Chr6 1619825 1622230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0218 6 413 WRKY Transcription Factor Family AT1G62300 45.946 1.36e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g0218 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0218 - - gsj:114372133 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0293 6 2190618 2193058 Vra6g0218 6 1619825 1622230 PCT
Vra6g0218 6 1619825 1622230 Vra6g0218 6 1619825 1622230 PCT