Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0212 ATGCGGAAGGGAAGAGGAGGGGCGGCGTCCGTGGTCACGGCGGCGGCTGCGGCCGCCAACGGATCCCTTTTAAAGGAGCCTCGGTACCGGGGCGTGAGAAAGAGACCGTGGGGGAGGTTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCTCGAGCCTACGACGCCGCCGCACGGACTCTCCGGGGTCCCAAGGCCAAAACAAATTTCCCTCTTTCACACCCTTTCTGCTATCCGCACCCCACCACCAGTCCTCTCTTCTACGCGGGTTTCAACGACAGCAACCACATCAGCAACCTTAACAACCCTCAGAGACCCACCTCAAGTGGCATGAGTAGCACCGTCGAGTCCTTCAGCGGGCCACGCCCTCCCACAGCCGCCGGCGCTTCCACGGCGCCGTTTTTGACCACCACGCGGAGATACCCGCGCACTCCCCCTCTCGTCCCCGAAGACTGCCACAGCGACTGCGACTCTTCCTCCTCCGTCGTCGACGACGGTGACAACATCGTCTCCTCGTCGTTCCGCCCTCCCCTGCCTTTTGATCTCAACGCGCCGCCGTTCGACGATGCCGCTACCGATGACGATCTCCGCTGCACCGCGCTCTGCCTCTGA 654 0.6284 MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSHPFCYPHPTTSPLFYAGFNDSNHISNLNNPQRPTSSGMSSTVESFSGPRPPTAAGASTAPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNAPPFDDAATDDDLRCTALCL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0212 217 MobiDBLite consensus disorder prediction 112 134 - -
Vra6g0212 217 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Vra6g0212 217 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Vra6g0212 217 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Vra6g0212 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 200 - -
Vra6g0212 217 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Vra6g0212 217 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Vra6g0212 217 MobiDBLite consensus disorder prediction 168 182 - -
Vra6g0212 217 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Vra6g0212 217 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Vra6g0212 217 PANTHER ETHYLENE RESPONSE FACTOR 4 200 - -
Vra6g0212 217 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Vra6g0212 217 MobiDBLite consensus disorder prediction 112 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0212 Vra-Chr6 1582697 1584045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0212 1 217 AP2-EREBP Transcription Factor Family AT1G50640 59.149 1.96e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra6g0212 AP2 1.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0212 K09286 - gmx:100803943 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0212 6 1582697 1584045 Vra6g0212 6 1582697 1584045 ECH
Vra6g0212 6 1582697 1584045 Vra6g0212 6 1582697 1584045 PCT