Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0207 ATGGGAAGCCAAATCGAACCAGCAAATGCAGCAAGACTGCATGGAGATAAATATTTCTTCTATAATTGTAGTTTTTTGGGTTATCAAGATACTTTATATGATCAATATGGACGTCATTACTTCAAAGATTGTTATATTGAAGGTGAAGTGGACTTTATATATGGCAGTGGACAATCTTACTATGAGAACTGTAGGATAAATGTATTGGGAAGATTTGCAGATTCTGCAGGGTTTGTGACAGCTCAGGGACGAAGTTCATCAGATGATCCAGATGGTTTTGTATTTGAAGGAGGCTTCCTTGGTGGGAATGGTAAAGTGAATTTAGGAAGAGCATGGCAACCCTATTCAAGAGTCATATTTCATAAAACATATTTTTCTGACATTGTAACTCCTCATGGATGGAGTGCTTGGCATTATGCAGGAAATGAGAGTGGAATCACTTATGTTGAAGTTGATTGTGGAGGACCAGGAGCTGATACCTCAAATCGTGTTTCATGGATGAAAAGCCTAAATACTTCAGAAATAGAACAATTTTCTTTATCATCTTTTATTAATAAGGATGGATGGGTTGACAACTTACCAATAGAATCCTCCTAA 597 0.3685 MGSQIEPANAARLHGDKYFFYNCSFLGYQDTLYDQYGRHYFKDCYIEGEVDFIYGSGQSYYENCRINVLGRFADSAGFVTAQGRSSSDDPDGFVFEGGFLGGNGKVNLGRAWQPYSRVIFHKTYFSDIVTPHGWSAWHYAGNESGITYVEVDCGGPGADTSNRVSWMKSLNTSEIEQFSLSSFINKDGWVDNLPIESS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0207 198 SUPERFAMILY Pectin lyase-like 6 194 IPR011050 -
Vra6g0207 198 PANTHER PECTINESTERASE 4 195 - -
Vra6g0207 198 Gene3D - 1 198 IPR012334 -
Vra6g0207 198 Pfam Pectinesterase 2 186 IPR000070 GO:0030599|GO:0042545
Vra6g0207 198 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0207 Vra-Chr6 1544454 1545340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0207 8 190 Carbohydrate Esterase AT1G05310 45.745 8.28e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0207 - - vra:106763223 425.631