Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0187 ATGGAGACGGAGGAGGAGCTCGTTCCCGATCCCAAACCGGAGGAACAGACGTTGCCGCTTCAGAACGGGGACTCTGACCAGCGCTGCGCCAAGAAGCCCAAGGTTGACGAGGACGCCGAATTGAAGAGAGTGGCCGAGATTGTTCTCGTTCTCTCAACCATGGCCTCCGTGCGTGCGGGGAGGAAGCCCTCCGACGCTGAGGTCGAGCTCATGAGAGAGGCGCGCGCTAAGCTCGCCAGCCTCTGCCAGGGTTTGGCTCCCAAGGATATTGTAGCCAGGGAAGCAATTGGAACCGTTATCGAGGATCTCGGATTGCACTCCAAGCTTAAGGACCAGAGGCTAGGGTTTCGAACTCCCAAGATGTCTATTGCCGAGAGGTATTCACATGCTAAGTGGAAGATGGAGGAAGCAAAAAAGTTTTCTGCACCTTCTACAACACATACATCTCAACCCTTACAATCAAACATTGGTGGACCTGTTGACAATCGTGTGCCATCACATGTTCGAATGTTCGCTTCTGATAAACCAAGCCAGCCAGCAATCCCTTCTACGGGTACCGTAGTGTCTATTCCTCCCCATGTTTCTGCAGGATCTTCTGCAGTATTGCAATACCAGTCAACTGGCAATGAAGTAAGACCACCTGTGGTTTCTGGTGTGATGCCTAGCGGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCTAAAGCTGAACATCCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTCTTATATGCTACAAGTCCAAGCAAATTCATCAGCAAACCAACCTTTGGTGAATGCTCCAGCATGGTCTATACCGACTCAAGCTGCTTCAATAGCAAGAACTGCATCAGAAAGCAAGGTGCCTGCTACTACCTCTGTGAAGGTTGAAGGAACATTGGACACAACCGTATCAAGGGCAGGGCCTCAAATAACAACAGACCCGAGCTTTAGACCGTTTATAACTCCAACAGCTTCTGTAAATTTGTCTACTGTGCACCAGCCTTTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCCAGTCACACTGATATTGCAAAGGTTGTCCAGAAAGTGTTACAACCAAAGCTTCCCAGTCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGGTGTGTGAGCTCAGTGTTCAGGAGGTTGATACTGTGCTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTTTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTGGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCGCCAAAGTATGGCCGTGTCATGAGATCGTCAAGCACACCACCAAAATTGCCTTCTAATATTGGTGGTATTCAAGCTTGTTCTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCCTGCAGATGGTAACAAATGGGAGCACTGTTCCAACTGTTGCCAGTGGCAATCACAATGTTGAGGTGCCATGTTACTCAAAGTTTGCTGATACCAAAGGTATACAAGGGATTGGCATTTCATCCAGTATTGAAGCTATCGATAAGAAGCCTGATCCAAACAACTCTATGAAATCTCTTAGTGCAGCCTCTACTCCTTCTATTGGCATGCTAGGTGAGTGCTCTACCAAACAAATAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGATTGTGAGTCTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAGTATGCAATCATCTCAAAATTTTCAAGTGGAACAGACAATGTCAAAAGACAATGCTGAAATATCACTAGATAAACGCATTGATAGTAATATTATGAATAATAATCAAAAGGACTCTCTTGAAGGGGAAAGTTTAACTTATGATATCAAGCGTGATGACAAAGATGCTGCACTAGCAAACATTGTTGGAATTTCTGGAACTAATACTGAAGGTAGACAGAACTCAGCATTATCATCAGATGGTTCACATGCTGTAGAATGGATTGGTGATGTAGTACAACTCGTAGATGAAAAGATTTTTTACCAATCTTGTTGTGTTGATGGAGTAACGTATAGGCTACAGGGTCATGCTCTTTTTCCTACCAGCAATGGAAAACTAGCTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTAAAGGTAACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGACTAGCTCTATTCAAGGTCCATGTGAAGTACTCCCGTCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAGTTAGGAATTGAGGAAAGTACTAGAATACAGCCCATTTTCCTTTGCAGGCAGGTGTTTTGGGGGTTTTGGAACGCGGGTTTTCTTGTATTGGTGGGTAATTGA 2484 0.4436 METEEELVPDPKPEEQTLPLQNGDSDQRCAKKPKVDEDAELKRVAEIVLVLSTMASVRAGRKPSDAEVELMREARAKLASLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQSNIGGPVDNRVPSHVRMFASDKPSQPAIPSTGTVVSIPPHVSAGSSAVLQYQSTGNEVRPPVVSGVMPSGHLGRNSSSLVLPKAEHPQFKVDGGSNGSSSYMLQVQANSSANQPLVNAPAWSIPTQAASIARTASESKVPATTSVKVEGTLDTTVSRAGPQITTDPSFRPFITPTASVNLSTVHQPLQATNIVQPPLIPSHTDIAKVVQKVLQPKLPSHPTWIPPSRDYMNKALTCQVCELSVQEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSSTPPKLPSNIGGIQACSENKAENIEPKVLQMVTNGSTVPTVASGNHNVEVPCYSKFADTKGIQGIGISSSIEAIDKKPDPNNSMKSLSAASTPSIGMLGECSTKQINSKVLTSKETSDCESLPKLSEPAKCESMQSSQNFQVEQTMSKDNAEISLDKRIDSNIMNNNQKDSLEGESLTYDIKRDDKDAALANIVGISGTNTEGRQNSALSSDGSHAVEWIGDVVQLVDEKIFYQSCCVDGVTYRLQGHALFPTSNGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMTSSIQGPCEVLPSDKFKQENDRRCQLGIEESTRIQPIFLCRQVFWGFWNAGFLVLVGN* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0187 827 CDD BAH 696 814 - -
Vra6g0187 827 MobiDBLite consensus disorder prediction 141 160 - -
Vra6g0187 827 Gene3D - 667 819 IPR043151 -
Vra6g0187 827 CDD PHD_SF 388 436 - -
Vra6g0187 827 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 17 810 - -
Vra6g0187 827 SUPERFAMILY FYVE/PHD zinc finger 379 444 IPR011011 -
Vra6g0187 827 SMART PHD_3 388 437 IPR001965 -
Vra6g0187 827 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 17 810 - -
Vra6g0187 827 Pfam PHD-finger 389 437 IPR019787 -
Vra6g0187 827 MobiDBLite consensus disorder prediction 1 36 - -
Vra6g0187 827 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
Vra6g0187 827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 450 IPR013083 -
Vra6g0187 827 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra6g0187 PHD 9.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0187 - - gmx:100807139 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0187 6 1372095 1380780 Vra6g0187 6 1372095 1380780 ECH