Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0185 ATGTCAACAGACTTGGACAGGCAGATAGAGCAGTTGAAGAGATGTGAGCCTCTGAAGGAGTCTGAAGTGAAGGCTCTCTGCCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGCAACGTTCAAAGGGTCGATGCTCCTGTCACCATATGTGGTGATATTCACGGTCAGTTTTATGACATGAAGGAGCTTTTCAAAGTGGGAGGGGATTGCCCCAAGACTAACTATTTGTTCCTTGGGGATTTTGTTGATAGAGGATTTTACTCGGTTGAAACATTTCTGCTTCTTCTCGCTCTTAAGGTGAGGTATCCAGATCGGATAACACTCATAAGGGGAAACCATGAAAGCCGTCAGATCACTCAGGTATATGGATTCTATGATGAGTGCCTTCGAAAGTATGGTTCAGTCAATGTATGGAGATATTGTACTGATATATTCGACTACTTAAGTTTGTCGGCCTTAATTGAAAACAAGATTTTCAGTGTTCATGGGGGTCTTTCTCCTGCAATTTCAACACTGGATCAGATACGGACTATTGATCGGAAGCAAGAGGTACCTCATGACGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAAGATATTGTGGATGGATGGGGTCTCAGTCCCCGTGGTGCTGGTTTCTTATTTGGTGGCAGTGTTGTTACTTCCTTTAACCACTCAAACAACATTGACTATATATGCCGTGCTCATCAGTTGGTGATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACCGTCTGGTCGGCTCCAAATTATTGCTACAGATGTGGTAATGTAGCTGCAATTCTTGAGTTGGATGGAAATCTGAATAAGCAGTTCCGGGTGTTTGAAGCTGCTCCACAGGAATCAAGAGGGACACCTGCAAAGAAACCAGCACCAGATTACTTCCTATGA 921 0.4376 MSTDLDRQIEQLKRCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDGNLNKQFRVFEAAPQESRGTPAKKPAPDYFL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0185 306 SUPERFAMILY Metallo-dependent phosphatases 4 293 IPR029052 -
Vra6g0185 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 3 306 - -
Vra6g0185 306 CDD MPP_PP2A_PP4_PP6 4 289 - -
Vra6g0185 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP-X ISOZYME 1 3 306 - -
Vra6g0185 306 SMART pp2a_7 18 289 IPR006186 GO:0016787
Vra6g0185 306 ProSitePatterns Serine/threonine specific protein phosphatases signature. 109 114 IPR006186 GO:0016787
Vra6g0185 306 Gene3D - 1 306 IPR029052 -
Vra6g0185 306 Pfam Calcineurin-like phosphoesterase 46 238 IPR004843 GO:0016787
Vra6g0185 306 PRINTS Serine/threonine phosphatase family signature 46 73 IPR006186 GO:0016787
Vra6g0185 306 PRINTS Serine/threonine phosphatase family signature 75 102 IPR006186 GO:0016787
Vra6g0185 306 PRINTS Serine/threonine phosphatase family signature 108 132 IPR006186 GO:0016787
Vra6g0185 306 PRINTS Serine/threonine phosphatase family signature 143 169 IPR006186 GO:0016787
Vra6g0185 306 PRINTS Serine/threonine phosphatase family signature 172 199 IPR006186 GO:0016787
Vra6g0185 306 PRINTS Serine/threonine phosphatase family signature 229 249 IPR006186 GO:0016787
Vra6g0185 306 PRINTS Serine/threonine phosphatase family signature 251 267 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0185 Vra-Chr6 1361564 1366876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0185 25 224 Calmodulin-binding Proteins AT5G63870 36.777 1.41e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0185 K15423 - fve:101293669 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0185 6 1361564 1366876 Vra6g0185 6 1361564 1366876 ECH