Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0184 ATGGCATCTTCTTCAAACTCGTGGGTGAAGGAATATAATGAAGCACTGAAACTTGCTGACGATATCAGTGGTATGATTTCTGAGCTGAGTTCATTTCCTGCATCTGGACCAGAAATCCAGCGTCATTCATCTGCTATAAGGAGGAAGATTACTATATTGGGTACCCGGCTTGATAGCTTGCAATCTCTATTGTCCAAGCTTCCTGGAAAGCAGCCGCCCATATCTGAAAAGGAGATGAATCGTCGGAAGGACATGCTTGCAAGTTTGAGATCAAAAGTTAATCAAATGGCTTCCACATTGAACATGTCAAACTTTTCAAATAGAGATAGTTTGCTTGGACCAGAAGGAAAACCAGATGCTATGGCCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGATTTCAACGGCAAATAATGAAAGAACAAGATGAGGGCCTTGAGCAATTGGAAGTGACTATAGCAAGCACAAAACATATTGCTTTGGCAGTGAATGAAGAGCTGAGTCTACACACCAGACTCATTGATGACTTGGATCAGCATGTAGATGTCACAGATTCGAGGCTTAGGCTTAACTTGAACATTTGTGTTGTGAAAACAGCGGGTGCAGAAGAACTTGGCAATTTTAAACAAGCGAACCAGGGGTGGTTGTTCCTGCCTGTGCATGCTTTTATCAGTTGTTGGTATAGTGTTTTTGGTTGTTGTCATTTGGCTATTGGTCAAATACTTATGATGCCATAA 741 0.4197 MASSSNSWVKEYNEALKLADDISGMISELSSFPASGPEIQRHSSAIRRKITILGTRLDSLQSLLSKLPGKQPPISEKEMNRRKDMLASLRSKVNQMASTLNMSNFSNRDSLLGPEGKPDAMARTVGLDNNGLVGFQRQIMKEQDEGLEQLEVTIASTKHIALAVNEELSLHTRLIDDLDQHVDVTDSRLRLNLNICVVKTAGAEELGNFKQANQGWLFLPVHAFISCWYSVFGCCHLAIGQILMMP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0184 246 PANTHER SYNTAXIN 1 191 IPR045242 -
Vra6g0184 246 SMART tSNARE_6 132 201 IPR000727 -
Vra6g0184 246 SUPERFAMILY SNARE fusion complex 135 192 - -
Vra6g0184 246 Gene3D - 139 194 - -
Vra6g0184 246 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 191 - -
Vra6g0184 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 190 IPR000727 -
Vra6g0184 246 CDD SNARE_Qc 140 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0184 Vra-Chr6 1352935 1355570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0184 1 190 SNARE and Associated Proteins AT1G16240 72.251 6.24e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0184 K08503 - gmx:100782666 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0184 6 1352935 1355570 Vra6g0184 6 1352935 1355570 ECH
Vra6g0184 6 1352935 1355570 Vra6g0184 6 1352935 1355570 PCT