Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0180 ATGGTTCTTTGCGACAGGTGGCGTTCTCTAACTGAGAAGAAGAATAGTGACGCGGCAACTTCTGCGAAAATCGAAGCAGCGCCAAAAGTGTTCTCAAAAGGTTTTAATTTAACTCTCAAACCTAACCCCAGTGACATTCTCACTCCTAGCTTCTGCTGTTCCTTCCCTCTCTCTGTGAGTGGAAAGCAAGGCTCTGGGATGAAGAGGGGTAGGTCATCATATTCCGATGGTGAAGAGGAGTACGAGTCTGAGAGTCAGTCAATCTCTGTGTCGAATTACCATCTTGTAGACGATGAGGACAATCCTGTGTCTTTTGCTGTGCTACCAATTCAATGGAATGATTCTGAGAACTCGGGTGCCTGCAAAGAGAAGGTGTTTCTATACGGGGATGCGGATAGTGGGCTGTTGAAGACTTTCATGCAAGTGACGGCGTGGCGATTTGATCTTTCCAATGTCAGACCCGAGGTATTCTTGCTGGCAAAGGATGGAAGGTGGATCAACCTTCAGAAGCCTAGAAAGAGTTTTCAAGAAGAAGTAAGGACTGTTTTGGTCACCCTTCACTTCCTCCACAGTATGAAGAGACAGCATCAAATGTCTGTGGGATCTTTCTGGCAAGACTTCAGCAAGGATAAGGAGTTGATTTCTTACGGTTTTAAGCCCTCAAAACATGATTTATCGGACCACATGCTTTTGATTGGCGAAGCTTCCAAAAGGGATGCTGTCTTAGCAAAGTCCAAGCTTTTGCTCGTGGTTTTGGAGAAACTGAAGAGTCAAAAGCTTCTTAACGAGGAAGTTAATGATTTTGAACTGCCAGGACTTCCTGTTGGTGGAACTGACAGTGATATGACAGACAAATCTAATGAAGAGACTGAAGAAACGGATGCTTTGGATGTTTGTGCACTTTGTGACAATGGTGGTAATGTTATATGTTGTGATGGCGTGTGCATGAGATCATTTCATGCTACCGAGGAAGCTGGTAGAGAAAATTGTTGTTTTTCTCTTGGTTTTACCCAGAAGGAAGTTGATGAGATCCAGAACTTTTATTGTAAGAATTGTGAATATCGTCAACACCAATGCTTTGCATGCGGCAAACTGGGGTCTTCTGATAAACTTAACAGTGTAGAGGTTTTTAAATGTACTTCTGCAACCTGTGACCGTTTTTATCATCCACGTTGTGTTGCAAAATTACTTCCCAGGGTGGTTAAGGATGCTGCAGAGGAATTTGAGAGAAATATTGCTGATGGGATTCCTTTTACTTGTCCCCTTCATTATTGTTGTGTCTGTAAAGGATTGGAAAATATTATGGATCCTGAGTTGCAGTTTGCTGTTTGTAGACGTTGTCCAAAGGCATATCATCGTAAATGTTTGCCAAGAGAAATTAGTTCTGAAAACAATGATATACTAAGGGCTTGGGAAGGTCTTCTACCAAAGAACCGTATTCTTATATATTGCTTAAATCATGAGATTGATCCTGAACTTGGAACTCCTGTAAGAGATCATATAAAATTCCCCGAAATGAAAGCTACTGATCAAAAAATTGATACTACTACTGAGCAGAAAAAGCCTTCAACTAAAAAGATAGTTAAGTTGAAGAAAAATATTCACTCCAATAACTCATCTGGCAAAAGCACTTCTACAGGATCTAAACTGACTGCAAAACTGTTTTCTGATAAAGTTGGTAGCAAGAAGTCATCTGATAAGAGAATTTCTAGTTCAAATATGTCGAAAAAGCCAAACTCAAAAGAAACATCAAAGTGTTTGACTGAAAATAAGATGCCAATTTTGAAGAAATTTGAAATTCCTGACACTGAGCAAACATATAACCAGCTTACAGTTGGTAAGGACGAGGGTTCGGAGCAAATTAAATGGGGCAATCAGATAAATAAAGTGAATACTAACTTCTCATCTGTCAAGCCTAGTGGAGAGTTGAGGGTTGAATTGCCTCCACTGGATGCTGGTTCGGAAAAGAATTCATCCACTGCGTTGGAGAATGTCTTTGAAAAGCTCACTCATAGTCAGTCGTTGAGAAATGTTGTGGAGAAGACCATTACAACAGAGAAATTGGAAGATTCAGTGAATTCTGTTCGAACAGCTTTAAGCATGCTCAGTGGGGGCAGCATTGAGGACTCCAAAGCTGTTTGTGACCCTGATGTTTTGAAACAGATATTTAAGTGGAAGATCGCAGATAAACTTCATTGGTATGTTCAGAATGGTGATACGATTGTGAACTTGAGATGTGGTGCTGATGATTTTAGCATCCTTTTGAAGAAAAGGCTTGAGGAGACTGGGAAGAGATGTTCGTACAGAAACTATGATTTACTTCCAACAAAGAATGATTTTAGTTTTGAAAAGAAGAAATGGATGACTGTCCAACAAACCGAGTTACCCACAGGATCACAATTGATCATTCGTCTCAGCCCTCCCTTTGGTCATAATGCAGCATTGGCTAACAAGTATATAGATAAGGCCCTTGAGTTTAAACCAAAGCTCCTAATTCTTATATTAGCACAAGAGATACAAAGGCTTGATAAGAAGCTATCACGTTATAATCTTATATGGGAGGATAAGAATTTTCTATCAGACACGTCAATTGATCTACCTGGATCAGCTGATGTAAATGATGGACAAATGGATCAAAGGAATGTAAGGCCACCTGTACTCTCTCTCTGGAGCCGCTCTGACTGGACTACAAAACACAAGGTCATAGCCCAACAGCATGCTCATGTGTGCAGCGAGCATAAAGTGTCAACGACAGAAAAATTTAAGTCTGACACGTTGGCTGCTGCTGTTCATGCTAACGGTGGAAATTATGCTGACAAATCAAAGTTAACTGATGACGAAGAATATCAAGCATCTGTAATTGGTGATGTTCAGAACAGAAGCTACAGAAGGGCATGTGATAATGTTGACGAACATAAAAAGGGCAAGACTGAGAAGTCAGGAAAGAAGAGAAAACATATTGGCGAATCCAAACCAGCCAAAAGGCAGGCTGTAAATAAAATGGCTAATGGAGTACCTGACCACACTCAACAACCAAATCCAATCAAGAAGACAGGTTCTTTGGATTCTGAACTTCGTACATTCCTTAAAAGTGGCAGTTCTGGACATAGTGGACGATCCCAACCTGGACATGGTGGATTGAATGGTTTTGCTGCTGCTCCTAACTATGTATATGCGAGCCAACATTCGTGTGGTTGGCTCGAAGAGTAG 3210 0.4084 MVLCDRWRSLTEKKNSDAATSAKIEAAPKVFSKGFNLTLKPNPSDILTPSFCCSFPLSVSGKQGSGMKRGRSSYSDGEEEYESESQSISVSNYHLVDDEDNPVSFAVLPIQWNDSENSGACKEKVFLYGDADSGLLKTFMQVTAWRFDLSNVRPEVFLLAKDGRWINLQKPRKSFQEEVRTVLVTLHFLHSMKRQHQMSVGSFWQDFSKDKELISYGFKPSKHDLSDHMLLIGEASKRDAVLAKSKLLLVVLEKLKSQKLLNEEVNDFELPGLPVGGTDSDMTDKSNEETEETDALDVCALCDNGGNVICCDGVCMRSFHATEEAGRENCCFSLGFTQKEVDEIQNFYCKNCEYRQHQCFACGKLGSSDKLNSVEVFKCTSATCDRFYHPRCVAKLLPRVVKDAAEEFERNIADGIPFTCPLHYCCVCKGLENIMDPELQFAVCRRCPKAYHRKCLPREISSENNDILRAWEGLLPKNRILIYCLNHEIDPELGTPVRDHIKFPEMKATDQKIDTTTEQKKPSTKKIVKLKKNIHSNNSSGKSTSTGSKLTAKLFSDKVGSKKSSDKRISSSNMSKKPNSKETSKCLTENKMPILKKFEIPDTEQTYNQLTVGKDEGSEQIKWGNQINKVNTNFSSVKPSGELRVELPPLDAGSEKNSSTALENVFEKLTHSQSLRNVVEKTITTEKLEDSVNSVRTALSMLSGGSIEDSKAVCDPDVLKQIFKWKIADKLHWYVQNGDTIVNLRCGADDFSILLKKRLEETGKRCSYRNYDLLPTKNDFSFEKKKWMTVQQTELPTGSQLIIRLSPPFGHNAALANKYIDKALEFKPKLLILILAQEIQRLDKKLSRYNLIWEDKNFLSDTSIDLPGSADVNDGQMDQRNVRPPVLSLWSRSDWTTKHKVIAQQHAHVCSEHKVSTTEKFKSDTLAAAVHANGGNYADKSKLTDDEEYQASVIGDVQNRSYRRACDNVDEHKKGKTEKSGKKRKHIGESKPAKRQAVNKMANGVPDHTQQPNPIKKTGSLDSELRTFLKSGSSGHSGRSQPGHGGLNGFAAAPNYVYASQHSCGWLEE* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0180 1069 MobiDBLite consensus disorder prediction 969 985 - -
Vra6g0180 1069 PANTHER ENHANCED DOWNY MILDEW PROTEIN 727 998 - -
Vra6g0180 1069 PANTHER ENHANCED DOWNY MILDEW PROTEIN 81 726 - -
Vra6g0180 1069 MobiDBLite consensus disorder prediction 969 997 - -
Vra6g0180 1069 MobiDBLite consensus disorder prediction 508 587 - -
Vra6g0180 1069 CDD PHD2_NSD 358 423 - -
Vra6g0180 1069 Pfam Cytosine specific DNA methyltransferase replication foci domain 86 196 IPR022702 -
Vra6g0180 1069 MobiDBLite consensus disorder prediction 533 552 - -
Vra6g0180 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 355 IPR013083 -
Vra6g0180 1069 MobiDBLite consensus disorder prediction 508 524 - -
Vra6g0180 1069 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 81 726 - -
Vra6g0180 1069 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 727 998 - -
Vra6g0180 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 441 IPR013083 -
Vra6g0180 1069 MobiDBLite consensus disorder prediction 566 587 - -
Vra6g0180 1069 SMART PHD_3 358 424 IPR001965 -
Vra6g0180 1069 SMART PHD_3 298 353 IPR001965 -
Vra6g0180 1069 SMART PHD_3 425 488 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0180 Vra-Chr6 1329411 1339296 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0180 - - gmx:100806429 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0180 6 1329411 1339296 Vra6g0180 6 1329411 1339296 ECH
Vra10g0244 10 6745788 6761581 Vra6g0180 6 1329411 1339296 PCT