Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0171 ATGCCGAACCAAGATATTAGCAGTTACCTTAAAGAACCTCGTCTTGTGGCCAGAAAGTTCTTGGCCAGACCTCAACATGAGGGTGTTGGGGCAGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGAACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTCACGGCTCCTGCTGGGTTTCCTGATCATCCACACAGAGGATTTGAGACAGTCACATACATGTTGCAGGGAGCCATAACACATGAAGATTTTGAAGGACGAAAGGGAACAATTGAAGCTGGTGACTTGCAGTGGATGACTGCAGGAAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACTCAAAAGGGTCTTCAGCTGTGGATCAATCTCTCTTCAAAACATAAAATGATTGAGCCAAGGTACCAAGAAATGCTGAGCAAGGACATAGCAGAAACTATGATAGATGGAATCAAAGTCAGAGTGATAGCAGGAGAAGCTTTTGGAATAAAGTCTCCAATCTACACAAGAACACCAACCATGTACTTGGATTTTTCCCTCAAACCTGGTGCTCACTTGCAGCAACTTATACCAAAATCTTGGAATGCTTTTGTGTATATATTGGAAGGAGAGGGAGTTTTTGGGAACCAAAAGTCTCAACCTGTGACTTCTCATCATATACTTCTTCTTGGTTCTGGGGATGGCCTTGAAGCATGGAACAAATCTTCAAAGGTTCTTAGGTTCATTTTGGTTGGAGGGGAACCCTTGGGGGAACCTGTGGTGCAATTTGGACCTTTTGTGATGAACACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAGAATTATACCAATGGATTTGAGAAAGCAAGACACTGGAGATCTGAAACTTCACTTAGCCTTGATTATTGA 906 0.426 MPNQDISSYLKEPRLVARKFLARPQHEGVGAVVRRSIGRFELKNFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGRKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEAFGIKSPIYTRTPTMYLDFSLKPGAHLQQLIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGSGDGLEAWNKSSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSETSLSLDY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0171 301 CDD cupin_pirin_N 31 128 - -
Vra6g0171 301 PIRSF Pirin 12 292 IPR012093 -
Vra6g0171 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Vra6g0171 301 Pfam Pirin 33 126 IPR003829 -
Vra6g0171 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Vra6g0171 301 CDD cupin_pirin_C 176 252 - -
Vra6g0171 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Vra6g0171 301 PANTHER - 1 299 - -
Vra6g0171 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Vra6g0171 301 PANTHER PIRIN-RELATED 1 299 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0171 Vra-Chr6 1242840 1246042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0171 13 289 Calmodulin-binding Proteins AT3G59220 59.140 6.73e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0171 K06911 - gmx:100811930 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0171 6 1242840 1246042 Vra6g0171 6 1242840 1246042 ECH
Vra10g0255 10 6903860 6907357 Vra6g0171 6 1242840 1246042 PCT