Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0165 ATGTCGTTATCTAATGCACAAATAGAGAAGCATGCAGCAGTACTAGCACATTCATTTCGACAGCAGATAAAGAAGAAGCTGAAAATGCAGAACACAAGAGGTTTTTCTATGTTGAGGCTATTTCTCATTGCTATCCTTTTCTTTATCATAGAATGTGCAGGAGGTGAGTTATCAGAATCTGAGTCTTTCTTCAATTTCCTGAGAGCAGTTGATCCCCAAAACGTGCTTAACAAAACTACCTTGGTTGGATCACCATCACATTCGTGCTTGGTCAAGTTGAATGGTGTAAGATGTGACTCAAATGCTACTAATATTGTACATATAAGGCTTGAGAACTTGAACCTTAGTGGCACGATTGATGCAGATTCACTATGCAGGCTCAAAAAGTTAAGAGTGGTGAGCTTGGCTAACAACAACATCAGAGGAACCATTCCACCTTCCATTTTGCATTGTACAAGGTTGACACATTTGAATTTAACCAGCAATCAATTGAGTGGGAGGTTGTCAAAGGCCTTAACAAAATTGAAACATCTAAGGAACTTGGACATCTCCAATAACAACTTTTCTGGTATGATCCCAAGTAAACAGCAATATAGGCGATTGGTTAGTTACTACGTGACACCAAATGTTAAGTTGGAAAGCAATAGTACCAAAGAGGGGCTAAAAGAAAGTGACAGAAACACAATGCAGCAACCAACACCAGATTCTTTATCAGACAGTGCTGATAAAGCTTTAAGGCCAAATAAAGGGACAACAATTTTGGTGGTGTTACTTTTGGGCACTGTGGTGCTTGTGTTATCCCTTTACTTTCTGGTAAGAAAGTCATTAGATTTAACTGAAAGGAGAGAGGTAGTTAAAGAGAAACATGATGTGTCAAAGGATCTATCTACAGAAGTTCAAGAGGTGAACCAAAAGGAAGGAGATTCTAAGCTTGTTTTCTTTGTTGAAGATCGTGAAAGGTTCACAATGGAGGACCTGCTTCGAGCCAATGCTGATTTGAGGAGTGAAGGCTTTTGCAGCAGCCTTTACAAGGTGAAGTTGGAGAACAATGATCACTATGCAGTCAAAAGATTGAAGAATCTGCAGGTTTCCTTGGAAGAATTTGGTGAAACATTGAGGAAGATTAGTAACTTGAAGCATCAAAATATCCTCCCCCTTGTTGGTTATCGTTCCACCAGTGAAGAAAAATTCGTTATTTACAAATATCAGAACAATGGAAGCCTGCTTAATCTGTTAAAGGATTACATAGCAGGTAGAAAAGATTTCCCATGGAAACTGCGTCTGAATATAGCATGTGGAATTGCAAGGGGTTTAGCCTTCATATATAGGAAGTCAGATGAGAAGGAGGAGGTCATTCCTCATGGAAATCTGAAGCCATCAAACATCCTTCTAGATGAGAACAATGAGCCACTAATAAGTGAGCATGGTTTATCAAAATTCATGGATCCAAATAGAGGTTTTCTGTTTTCCTCACAGGGATACACAGCTCCTGAAAAGAGCCTAACAGAAAAGGGTGATGTCTACAGCTTTGGAATGATTTTGCTTGAACTGCTAACAGGAAAAAGCATAGAGGTTAGCAGAATAGACCTTGCAAGATGGGTGAGGTCGATGGTGAGGGAGGAATGGACAGGAGAAGTCTTTGACAAGGAAGTTAGGGAGAATGAGCATCAATGGGCGTTTCCTCTTCTGAACATAGCCCTCTTGTGTGTGTCACGTTTCCAAGAAACAAGGCCAACCACTGTGGATATTCTGCAGAAGATAGAGGAGGTCATGGATCAACATGAACAATATCAGGAACGTTTTGCTTCCAAATGCTGTTCCAGTGGATCCACCCGTGACGAATGTTGTTCACTGCACAAAATCATACCTGAAACATGGGATTCTCCAGGATCAAATTATTGA 1902 0.4027 MSLSNAQIEKHAAVLAHSFRQQIKKKLKMQNTRGFSMLRLFLIAILFFIIECAGGELSESESFFNFLRAVDPQNVLNKTTLVGSPSHSCLVKLNGVRCDSNATNIVHIRLENLNLSGTIDADSLCRLKKLRVVSLANNNIRGTIPPSILHCTRLTHLNLTSNQLSGRLSKALTKLKHLRNLDISNNNFSGMIPSKQQYRRLVSYYVTPNVKLESNSTKEGLKESDRNTMQQPTPDSLSDSADKALRPNKGTTILVVLLLGTVVLVLSLYFLVRKSLDLTERREVVKEKHDVSKDLSTEVQEVNQKEGDSKLVFFVEDRERFTMEDLLRANADLRSEGFCSSLYKVKLENNDHYAVKRLKNLQVSLEEFGETLRKISNLKHQNILPLVGYRSTSEEKFVIYKYQNNGSLLNLLKDYIAGRKDFPWKLRLNIACGIARGLAFIYRKSDEKEEVIPHGNLKPSNILLDENNEPLISEHGLSKFMDPNRGFLFSSQGYTAPEKSLTEKGDVYSFGMILLELLTGKSIEVSRIDLARWVRSMVREEWTGEVFDKEVRENEHQWAFPLLNIALLCVSRFQETRPTTVDILQKIEEVMDQHEQYQERFASKCCSSGSTRDECCSLHKIIPETWDSPGSNY* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0165 633 ProSiteProfiles Protein kinase domain profile. 328 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0165 633 Gene3D Ribonuclease Inhibitor 62 235 IPR032675 -
Vra6g0165 633 SUPERFAMILY L domain-like 89 195 - -
Vra6g0165 633 Pfam Protein kinase domain 337 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0165 633 PANTHER OS05G0588300 PROTEIN 40 626 - -
Vra6g0165 633 PANTHER TYROSINE KINASE FAMILY PROTEIN 40 626 - -
Vra6g0165 633 MobiDBLite consensus disorder prediction 215 243 - -
Vra6g0165 633 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Vra6g0165 633 SUPERFAMILY Protein kinase-like (PK-like) 335 587 IPR011009 -
Vra6g0165 633 Gene3D Transferase(Phosphotransferase) domain 1 404 612 - -
Vra6g0165 633 Gene3D Phosphorylase Kinase; domain 1 293 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0165 Vra-Chr6 1207184 1209682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0165 40 618 Receptor kinase-like Gene Family AT5G53320 32.566 8.76e-80 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g0165 Pkinase 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0165 - - vra:106763201 1233.39