Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0164 ATGTCTGATAAACTATTGTATGATCTCTGTTCTCAATTTCAGATGCCGTTTGTTAACCCTGACCCTTCAGACAAAGATTCTGAGCCATTTGTCGAGACAGATCCAACTGGTCGCTATGGTAGATACAGTGAGTTGCTTGGTTGTGGTGCTGTGAAAAAAGTGTACCGTGCATTTGATCAGGAAGAAGGAATAGAGGTGGCTTGGAACCAAGTGAAGCTGAGGAATTTCTGTGATGATCCTACCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTGCTCAGAAGCTTGACCGACAAAAACATCATCGCACTTTACAGTGTCTGGAGGGATGACCAGCGTAACACTCTGAATTTCATCACTGAGGTTTGTACCAGTGGTGATTTGAGGGAGTATAGGAAGAGGCACAGGCATGTTTCCATGAAGGCCCTCAAGAAGTGGTCTAAGCAGATTTTGAAAGGGCTGAATTATCTGCACTTGCATGATCCCTGCATCATTCACAGAGATCTCAACTGTAGCAATGTGTTTGTCAATGGAAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGTAGGAGCCATTGTGCTCACACGATTCTTGGGACACCAGAATTCATGGCTCCAGAGTTATATGATGAAGACTACACTGAGTTGGTGGACATTTATTCATTTGGGATGTGTTTGCTGGAAATGGTGACGCTGGAGATTCCTTACAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGTGTTCTGGAGTTAGACCTGCAGCCCTGAACAAGGTGAAAGATCCAGAGGTGAAGGCCTTCATTGAGAAGTGCCTTGCTCAGCCAAGAGCAAGACCTTCTGCAGCTGACCTTCTCAAAGATCCCTTCTTTGATGAGATTGTTGATGATGACGAAAATGATGACTGTTCTTCTTCTCACCAGTAA 948 0.4441 MSDKLLYDLCSQFQMPFVNPDPSDKDSEPFVETDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDPTMVDRLYSEVRLLRSLTDKNIIALYSVWRDDQRNTLNFITEVCTSGDLREYRKRHRHVSMKALKKWSKQILKGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGRSHCAHTILGTPEFMAPELYDEDYTELVDIYSFGMCLLEMVTLEIPYSECDNVAKIYKKVCSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSAADLLKDPFFDEIVDDDENDDCSSSHQ* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0164 315 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 312 - -
Vra6g0164 315 SUPERFAMILY Protein kinase-like (PK-like) 31 304 IPR011009 -
Vra6g0164 315 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 15 312 - -
Vra6g0164 315 Gene3D Phosphorylase Kinase; domain 1 24 121 - -
Vra6g0164 315 ProSiteProfiles Protein kinase domain profile. 40 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0164 315 CDD STKc_WNK 38 298 - -
Vra6g0164 315 Gene3D Transferase(Phosphotransferase) domain 1 123 304 - -
Vra6g0164 315 Pfam Protein kinase domain 43 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0164 Vra-Chr6 1201083 1203831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0164 19 302 MAP Kinase Kinase Kinase AT5G55560 80.282 4.79e-179 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra6g0164 Pkinase 4.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0164 K08867 - gmx:100786910 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0164 6 1201083 1203831 Vra6g0164 6 1201083 1203831 ECH
Vra10g0270 10 7140742 7142819 Vra6g0164 6 1201083 1203831 PCT