Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0162 ATGGACGCCTCCGCCGCCACCACCTCCGCCGAGCCCAGACCGAGTTCGGAGCTCTGCCTCAACGGGGCATCTGAGGATCCAAATCGAGGTGGGCCGGGTCAGAATTCGACGGCGAGGTACAAGCTGATTGCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCAGGACTGAGTCCGACGTCCTTTCTGGAATCACCGGTTCTTCTCTCCAACATGAAGGTGGAGTCTTCACCAACTACAGGGTCCCTCCGCAAGCTTCAACAAACAGTACATGGTTCTAAGGCCTCTGCTACATTTGCAGTAACCACTGCATGCTTCAATACCAATACTGTTGAGGACAGGAAATCAAGCTTCTTTGAGTTTAAACCACTCAACAGGTTGAATATGGTTCCTGCTGACTTCAATAACCATGTTATCAAACAATCAACTCAAGCAGAAGGTCTAGGAAAAGCACAATCATTTGTTTCCTCACCATTAGTTGAAAGTGAGATAGCAGTTCCTGCTAACGAATTAAGTCTATCATCACCTGTACAAATGGTTAGTTCTAGTCCTAGTGCTCCTGTTGATGTTGATTTGGATGACGTTAACCACAAAAGCAACACAGCTACTGGGCTTCAAGAATCACATGTTGAGGTTAGAGGCAATGGAATTTCAGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATACGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTGTTTGAACGCTCTCATGATGGTCAAATCGCAGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGACAAAGCATCCTCCATGTATGGTCAGTTGTCCCATGCTGCTGAGCTCAACAGTGCTTCTGAGCCATCAACCATAGCAACAAACGATGATGGTTTAGAGGGTGTTGGGTTTGTGTCAAACAGGATTAGTGATGACAATGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCTGTAGTTAAGCCTATCCGAGAACCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCGGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCAAAGAATAGCAGCCATGACATGGCAGTAGCTGCAGCTGGACAGACAAGAATTAAGTTGGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGAATTAGCTCAGCTGCTGAACATAGATCAAACGCACAAGGGAAAATAATGCACTCTGAATTTGGGAACACTCAAACTCACACAAGTAATTCCAATTTCAAGTTTGTTCATACTAGCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTTCAGCTTTAAACCATGCCTCGTATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATGA 1692 0.4474 MDASAATTSAEPRPSSELCLNGASEDPNRGGPGQNSTARYKLIAPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVESSPTTGSLRKLQQTVHGSKASATFAVTTACFNTNTVEDRKSSFFEFKPLNRLNMVPADFNNHVIKQSTQAEGLGKAQSFVSSPLVESEIAVPANELSLSSPVQMVSSSPSAPVDVDLDDVNHKSNTATGLQESHVEVRGNGISVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIAEIIYKGTHDHPKPQPSCRYSTDKASSMYGQLSHAAELNSASEPSTIATNDDGLEGVGFVSNRISDDNDDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSAAEHRSNAQGKIMHSEFGNTQTHTSNSNFKFVHTSSAPVYFGVLNNSSNPYGSRDNRSDGSALNHASYPCPQSMGRILMGP* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0162 563 SUPERFAMILY WRKY DNA-binding domain 377 445 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 SMART WRKY_cls 385 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 ProSiteProfiles WRKY domain profile. 380 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 MobiDBLite consensus disorder prediction 1 15 - -
Vra6g0162 563 MobiDBLite consensus disorder prediction 1 37 - -
Vra6g0162 563 Gene3D WRKY domain 370 446 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 Gene3D WRKY domain 222 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 31 543 - -
Vra6g0162 563 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 543 IPR044810 GO:0003700
Vra6g0162 563 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0162 563 Pfam WRKY DNA -binding domain 386 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0162 Vra-Chr6 1177996 1183730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0162 43 563 WRKY Transcription Factor Family AT4G26640 53.931 3.34e-176 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g0162 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0162 - - gmx:100816583 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0162 6 1177996 1183730 Vra6g0162 6 1177996 1183730 ECH
Vra10g0272 10 7173012 7178774 Vra6g0162 6 1177996 1183730 PCT