Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0160 ATGCAAATGTCTCAGAAACATAATATGTCCTACGAGGCTGTCCAAAATCTTGGGTCATGCTGCTTCCTACAAAGTGAGAACCTAGACTACTATTCATCCTCTGATAACAGTAGTCATGCAACCTACCCTTCTGTTCGTACTTTAGAACAATATTGCACCCTGGAATCTTCTACAAAGAACAGTTTTCCTTCCCTAAATTCCCCAACTACTGTCAGCTTCTCACCTAACCATAGCCCACTCTCAAAGCTACAACCAAAATCATATGTGTTGAGTTCACATAGTTCTCTTGAAATTACTAATGACTCAATAGAAAATGAATCATGTTTGACGCATAATGACAATGAGCTGAGGCACAAGATAAGAGAGCTTGAAAGTGCTATGTTGGGACATGATGCAGATATTCTGGATATGTATGATACTGTAATTCCGGAGGAATCTGATTCATTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAAATGATATCTAGAGGGGATTTGAGAGAGATGCTTTGTGCATGTGCAATAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTACGCAAAATGGTCTCAGTTTCTGGCAACCCAATCCAACGATTGGGGGCATACATGTTGGAGGCTCTTGTTGCAAGACTGGCCTCTTCAGGAAGCACAATCTACAAAGCTTTGAAATGTAAAGAGCCTACTGGTAGGGAACTCCTTTCACACATGCACCTACTCTATGAAATCTGCCCATATCTCAAATTTGGGTACATGTCTGCAAATGGAGCTATTGCTGAAGTCATGAAGGGGGAAACTGAAGTCCACATAATTGATTTTCAGATCAACCAGGGAATACAATGGGTGAGCCTAATCCAAGCTCTTGCTGGCAGACATGGAGGACCCCCCAGGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGGAAGGAGGTCTTGAAATTGTGGGAGAAAGGTTGTCAGCACTTGCACAATCATATAATGTACCCTTTGAGTTCCATGCCTTAGAAGTTGCTCCCACTGAGGTTGAAATTAAAGACCTTGAACTTCGACCTGGTGAAGCTATTGGTGTGAATTTTGCCATGATGCTGCACCATCTTCCAGATGAAAGTGTGGATGGTAAGAACCATCGTGGCCGGTTGTTGAGACTTGCAAAGTGTTTGTCTCCAAAGATCGTGACACTAGTTGAGCAAGAATCACATACCAGCAACCTCCCATTCTTCCCCCGTTTTGTTGAGACAATGAACTATTACTTGGCTATTTTCGAATCAATAGATGTTGCTCTTCCAAGGGAGAACAAAGAAAGGATTAACGTGGAACAGCACTGTTTGGCTCGAGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCACGAGCTTCTCAAGAACTGGAGATCACGTTTCACCATGGCTGGATTCTCACCATATCCATTGAACTCCTTTATTACCAGTTCGATTAAAAATCTTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGAGCACTATGTCTTGGTTGGATGAATCAAGCTCTTATTACTTCTTGTGCTTGGAGGTGA 1617 0.4255 MQMSQKHNMSYEAVQNLGSCCFLQSENLDYYSSSDNSSHATYPSVRTLEQYCTLESSTKNSFPSLNSPTTVSFSPNHSPLSKLQPKSYVLSSHSSLEITNDSIENESCLTHNDNELRHKIRELESAMLGHDADILDMYDTVIPEESDSFLLEAERWKKMMEMISRGDLREMLCACAIAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGRELLSHMHLLYEICPYLKFGYMSANGAIAEVMKGETEVHIIDFQINQGIQWVSLIQALAGRHGGPPRIRITGFDDSTSAYAREGGLEIVGERLSALAQSYNVPFEFHALEVAPTEVEIKDLELRPGEAIGVNFAMMLHHLPDESVDGKNHRGRLLRLAKCLSPKIVTLVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRENKERINVEQHCLAREVVNLVACEGAERVERHELLKNWRSRFTMAGFSPYPLNSFITSSIKNLQQSYQGHYTLEERDGALCLGWMNQALITSCAWR* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0160 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 537 IPR005202 -
Vra6g0160 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
Vra6g0160 538 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 537 - -
Vra6g0160 538 Pfam GRAS domain family 168 538 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0160 Vra-Chr6 1170997 1174158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0160 44 538 GRAS Transcription Factor Family AT1G50600 59.082 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra6g0160 GRAS 4.6e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0160 - - gmx:100779977 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0160 6 1170997 1174158 Vra6g0160 6 1170997 1174158 ECH
Vra10g0273 10 7180723 7183864 Vra6g0160 6 1170997 1174158 PCT