Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0159 ATGGCTGCTTCTGTGTCTCTCTATCCCTATAAACCCCTGCTATACTTTTCGACTCCTTCGTGTTTTCAGTCTCAATTTCGGAACTTGGACAGAGGGCATTTGGATTCTGCAAGGTTGAAGGGTATAGTGAAACTTGCAGCACATTCAAATCCGAAAATTCTCAAGACCAACAGGAAGTCAAAGTATGGAGAGGCACTGTCGTTTTACGATAGTGATGAAGACGATGAAGAAACTGACGAGGAAGAGGACGACGAAGATGACGATGATTGGCTTTCTGATGAGGAATTTGCTGAGCCTGCTAAATTTGATGTTAGGAACAAGAGATTGAAGTCGAAGACAGTTAAAGGAAAGGATAAAGAGCAGGAGTGGGAGTGGGGTTTGAGATCTTTGGACAATGAACATAGCATTAGATTGCCTAGAAGTGAGAGAGTGGCATCCTTACAACGAAATGAGAATGGAAAGGTTAGTAGAAATGTAAAGAACAAAAAATATCCGCGGTTGTCCGATGAGATTCCTTTAGATTTGAAATGGTTACCACTTCTTGATTACTTGAGCACCTTTGGAATGAAGGAGTCACACTTTATCCAAATATATGAGAGGCACATGCAAGCACTTCAAATTAATGTTGGTTCCGCACAGGAAAGGTTAGAATACTTAATGAGTGTTGGTGTTAAACATAGAGATGTAAGAAGAATCCTTTTGAGGCAGCCACAAATTCTTGAGTATACAGTGGAGAACAATTTGAAGTCTCGTGTTGCATTCTTGAGGGGCCTGGGCATACCGAATTCTAGAATGGGCCAAATCATTGCTGCTGCTCCGTCTTTGTTTTCTTACAGTGTTGAGAATTCATTAAAACCTACAGTTAGATATTTAGTTGAGGAAGTAGGCATCAAGGAAAAAGATTTGGGTAAGGTCATTCAGCTTAGTCCCCAAATTCTTGTGCAAAGAATTGACATTTCATGGAATATGCGTTATATGTTTCTTACCAAGGAGTTGGGTGCACCCAGGGATAGCATTGTGAAGATGGTGACAAAACATCCCCAACTTCTCCATTACAGCATAGATGATGGATTACTTCCAAGAATAAATTTCTTAAGGAGCATAGGAATGAAAAATTCAGATATCTTGAAAGTATTGACTAGCCTTACGCAGGTGTTGTCTCTATCGTTGGAGGAAAATCTAAAGCCCAAATATTTGTACTTGGTAAATGAACTTAACAATGAGGTGCAATCCTTGACCAAGTACCCAATGTATCTTAGTTTATCCTTGGACCAGAGAATTCGTCCTCGTCATAGGTTCTTAGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCCCTTGGATCTCTTGTACCAACTGATGAATGTTTTTGCGAACAGTGGGCTGGAACAAGTTTGGATAAATATTTGGCATTCCGTCAGAGATTATTACTTCAAAAGTTTGCTGAGAAATATGAAAGAAAAATGTGA 1470 0.3973 MAASVSLYPYKPLLYFSTPSCFQSQFRNLDRGHLDSARLKGIVKLAAHSNPKILKTNRKSKYGEALSFYDSDEDDEETDEEEDDEDDDDWLSDEEFAEPAKFDVRNKRLKSKTVKGKDKEQEWEWGLRSLDNEHSIRLPRSERVASLQRNENGKVSRNVKNKKYPRLSDEIPLDLKWLPLLDYLSTFGMKESHFIQIYERHMQALQINVGSAQERLEYLMSVGVKHRDVRRILLRQPQILEYTVENNLKSRVAFLRGLGIPNSRMGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIKEKDLGKVIQLSPQILVQRIDISWNMRYMFLTKELGAPRDSIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDILKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCEQWAGTSLDKYLAFRQRLLLQKFAEKYERKM* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0159 489 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 33 481 - -
Vra6g0159 489 MobiDBLite consensus disorder prediction 65 90 - -
Vra6g0159 489 PANTHER CGI-12 PROTEIN-RELATED 33 481 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 MobiDBLite consensus disorder prediction 69 90 - -
Vra6g0159 489 Coils Coil 195 215 - -
Vra6g0159 489 SMART mt_12 376 408 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 SMART mt_12 303 335 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 SMART mt_12 266 298 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 SMART mt_12 409 440 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 SMART mt_12 195 225 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 SMART mt_12 340 371 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 Pfam mTERF 179 436 IPR003690 GO:0003690|GO:0006355
Vra6g0159 489 Gene3D Transcription termination factor 3, mitochondrial 240 476 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra6g0159 mTERF 1.3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0159 K15032 - gmx:100809638 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0159 6 1163325 1166212 Vra6g0159 6 1163325 1166212 ECH