Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0151 ATGTTGTCTCTTTCCTTACCCCTTTCCAACAATGTTCTTGTCCAACCCGTTTTCCTTCATGGCTTATCCGGATTCTTCCACCTTCTGTTGCTCATCGCGGTTTCACTGTCATGGGTTTGGAAGAAACTCACAACACGTATCAGGGATGATTCGGAGGAGAAACACGACAGCATCCTCTTCAAAGCAGCCGTGTTTTGTTCTCTTGGTGTTTCTACGTTCAGCTTTCTCCTCGGTTTGTTCAATTACTTCTACTGGTTCTCTAGTGGCTGGTCAGAAGAGAATTTCGTGAACCTTTTGGATTTGGCGCTCAGAACACTTGCATGGGGCGTTGTTTGTGTTTGCTTGCACGGGGGGTTTTTCAGTTCTGGCGAGAGAAGGTTCTCACTCCTCTTCAAAGCTTGGTGCGTCTTGTACCTCTTCGTGTCTTGCTATTGCTTCGTGGTGGACATTGTTGTTATATCAGAGAGACGTGTTGCTGTGCAAACTCAGTGCATGGTTTATGATGTGCTTTCCACTTGTGTTGGTTTGTTATTCTGTTACGTCGGGTATTTTGTGAAAGACAAAGAATACGTGAGAGCAAAAGAACATGACGGTACTCAGGAACCTCTTTTGGACGGTGAAACAAATGTTGCTGATGCCTTGGAGACAGAAGAGACCAAGGGTGGGGACACTGTTACCCCTTTCTCACATGCTGGCCTTTTGAGCCTTCTTACCTTCTCTTGGGTGAGTCCTCTTATAGCTGTTGGCAATAAGAAGGCCCTGGACCTTGAGGATGTTCCTCAACTAGACAGCAGAGACAGTGTAGTTGGAGCTTTTCCTGGTTTTAGAGATAAACTTGAGGCTGATTGTGGTGGAATTAATGGTGTCACCACACTGAAGTTGGTGAAGACCCTTGTAATGATATCGTGGAAGGAGATTCTGTTCACAGCTTTTCTTGCTTTGTCTCACACTTTGGCTTCTTATGTTGGTCCTTATCTCATGGATGGTTTTGTTGAGTACCTTGATGGACAACGGCTTTATGAAAACCAGGGCTATGTTTTGATTTCGGCCTTTTTCTTTGCAAAGATTGTAGAGTGTCTTTCTCAATTGCATCGGTGCTTTAGGTTGCAGCAAGTTGGACTTCGATTTCGTGCATTGCTTGTCACGATGATCTATAACAAGGCTCTGACCCTTTCTTGTCAATCAAAGCAGGGCCACACTGACGGGGAAATAATCAATTTCATGGCTGTTGATGCTGAAAGAGTTGGTGCCTTCAGCTGGCACATGCATGATTTGTGGATGGTGGCTTTGAAAGTTACATTGGCCTTTTTGATTTTGTATAAAAACCTTGGGCTGGCTTCCATTGTTGCTTTTGTTGCAACTACTGTAGTTATGCTGACAAATGTTCCCTTGGGATCATTGCAAGGGAAGTTTCAAAAGAGGTTGATGCAGTCGAAAGATACAAGAATGAAAGCCACAACTGAGATTTTAAGGAACATGAAGATTCTCAAACTTCAAGGATGGGAAATGAAGTTTCTATCAAAAATAACTGAGCTCAGGAAAACGGAGCAAGGTTGGCTTAAAAGAGGTGCCTATACTGCAGCCGTTACCTCGTTTTTGTTTAAGGGTTCCCCCACATTTGTAGCCGTTGTTACTTTTAGTACTTGTATGCTTATAGGGGTCCCCCTAAAATCTGGGAATATCTTGTCTGCACTCGCAACTTTCGAGATTCTTCAAGAGCCCATTTATAATCTTCCAGGTACAATTTCGATGATAGCACAGACTAATGTGTCTCTCGATAGGATTGCATCATTCCTTCGTCTGGATGACTTACCCTCTGATGTTGTAGAGAAGCTTCCCCGGGGAAGTTCTGATACAGCAATTGAACTAGTTGATGGAAACTTTTCTTGGGAATTATCTAACCCAACACTGAAAAATATAAATCTTAAAGTTCTTAATGGGATGAAGGTTGTAGTTTGTGGTACTGTTGGATCAGGCAAATCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCTAAAATATCAGGCATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTACTCAATCTCCATGGATACAAAGTGGCAAGATTGAGGATAATATATTGTTTGGTAAACAAATGGATAGGGAAAAATACGAGAAGGTACTTGAAGCGTGTTCCCTGAAGAAGGATCTGGAGATTTTGCCATTTGGTGATCAGACAATCATAGGAGAACGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAAATCGCACGTGCACTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTCAGTGCTGTGGATGCTCACACGGGCTCTCACCTCTTCAAGGAATGCTTGTTAGGCCTTTTACGTTCAAAAACAGTGGTTTATGTCACTCATCAAGTCGAGTTCTTACCTGCTGCTGACCATATATTGGTTATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATACTGATTTGCTTAGTTATGGAACTGATTTTATGGAACTTGTCGGTGCACACAAAAAGGCTCTGTCTACGCTAGATTCATTGGATGGAGAAAATGTATCTAATGAAATAAGCACCTTGGAACAAGATGTAAATGTCTTTGGCACGCAAAGTTCTAAAGAAGAGGAGGCAAGTAAAGATAGACAAAATGGCAAAACAAACGAAATTGAACCAAAAGGCCAGTTTAGTCAGAAAGAAGAAAGGGTGAAAGGTAAAGTTAGCTTTTCAGTTTATTGGAAATGTATCACAACAGCATATGGAGGAGCTCTTGTACCATTCATATTGTTAGCTCAGATTCTTTTTCAAGTTCTTCAAGTTGGCAGCAATTATTGGATGGCTTGGGCGACTCCCGTCTCAACAGATGTGGAACCAACTGTCGAAGGAATAACTCTTATAGTAGTTTATGTTAGTTTGGCTATTGGAAGTTCATTATGCATTCTTGCCAGATCAATGCTTCTTGTCACAACTGGTTATAAAACAGCTACCATACTCTTCACTAAAATGCACTATTGCATTTTCCGTGCTCCAATGTCATTTTTTGATTGCACTCCAAGTGGGCGAATCCTTAACAGAATTTCAACGGATCAAAATTCATTGGATACAAACATTCCTCGTCAAATTGCATCATTTTCCTTCATTACGATCCAACTTCTAGGAATTATAGCAGTGATGTCTCAGGCTGCATGGCAGGTTTTTGTTGTCTTTATACCTGTGATTATGGTCAGCATTTGCTATCAGCAATATTATATTCCATCAGCCAGAGAACTGTCACGCTTAGTTGGAGTCTCCAAAGCCCCACTCATACAACACTTTTCTGAAACAATTTCTGGTACTTCAACCATTAGGAGCTTTGATCAGCAATCAAGATTTCGGGAAATAAATATGAAACTGAGTGATGGGTATTCTCGGCCAAAGTTCAACATTGCTGGTGCCATGGAATGGTTGTGCTTCCGCTTAGATATGCTGTCCTCTATTATATTTGCCTTTTCCTTAATATTTATAATATCAGTTCCACCGGGATTCATAGATCCAGGCCTTGCTGGTTTAGCGGTTACATATGGACTAAATTTGAACAATATACAAGCTTTGATGATATGGAATCTGTGCAAAATGGAGAGCAAAATTATATCAGTAGAGAGAATACTTCAATATACTTGTATTCCCAGTGAGCCTCCCCTTGTTATAGATGAAAATCAGCCAGATTCTTCTTGGCCCTCAAATGGCGAGGTTGATATACAAGATTTGCAGGTTCGCCATGCTCCACATCTTCCGCTTGTGTTGTGTGGTCTTACGTGCAAATTTCATGGAGGACTGAAAACTGGTATTGTTGGGAGAACAGGAAGTGGTAAATCCACACTCATACAAACGCTTTTCCGCATTGTTGAGCCTGCTGCTGGAAAAGTTATGATTGACAACATCAACATCTGTTCCATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACGGTAAGAAATAATCTGGACCCCCTGGAAGAACACACTGATGAAGAGATTTGGGAGGCCTTGGATAAGAGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCCAAAGTTAGTGCGAATGGTGAGAATTGGAGTATGGGTCAGAGACAGTTGGTCTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTTCTTGATGAAGCCACTGCATCAGTCGACACAGCAACGGATAATTTGATTCAGCAAACTCTCAGGCAACATTTCGCTGACTCCACAGTTATTACCATTGCACACCGAATAACTTCAGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACACCCCAACAAAATTGCTAGAGAATAAGTCTTCATCTTTTGCTCAACTTGTTGCTGAGTATACCATGAGGTCCAAGTTCAGTTTTGAGGAATCTGATGATCACTGA 4497 0.4132 MLSLSLPLSNNVLVQPVFLHGLSGFFHLLLLIAVSLSWVWKKLTTRIRDDSEEKHDSILFKAAVFCSLGVSTFSFLLGLFNYFYWFSSGWSEENFVNLLDLALRTLAWGVVCVCLHGGFFSSGERRFSLLFKAWCVLYLFVSCYCFVVDIVVISERRVAVQTQCMVYDVLSTCVGLLFCYVGYFVKDKEYVRAKEHDGTQEPLLDGETNVADALETEETKGGDTVTPFSHAGLLSLLTFSWVSPLIAVGNKKALDLEDVPQLDSRDSVVGAFPGFRDKLEADCGGINGVTTLKLVKTLVMISWKEILFTAFLALSHTLASYVGPYLMDGFVEYLDGQRLYENQGYVLISAFFFAKIVECLSQLHRCFRLQQVGLRFRALLVTMIYNKALTLSCQSKQGHTDGEIINFMAVDAERVGAFSWHMHDLWMVALKVTLAFLILYKNLGLASIVAFVATTVVMLTNVPLGSLQGKFQKRLMQSKDTRMKATTEILRNMKILKLQGWEMKFLSKITELRKTEQGWLKRGAYTAAVTSFLFKGSPTFVAVVTFSTCMLIGVPLKSGNILSALATFEILQEPIYNLPGTISMIAQTNVSLDRIASFLRLDDLPSDVVEKLPRGSSDTAIELVDGNFSWELSNPTLKNINLKVLNGMKVVVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVTQSPWIQSGKIEDNILFGKQMDREKYEKVLEACSLKKDLEILPFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLRSKTVVYVTHQVEFLPAADHILVMKDGKITQCGKYTDLLSYGTDFMELVGAHKKALSTLDSLDGENVSNEISTLEQDVNVFGTQSSKEEEASKDRQNGKTNEIEPKGQFSQKEERVKGKVSFSVYWKCITTAYGGALVPFILLAQILFQVLQVGSNYWMAWATPVSTDVEPTVEGITLIVVYVSLAIGSSLCILARSMLLVTTGYKTATILFTKMHYCIFRAPMSFFDCTPSGRILNRISTDQNSLDTNIPRQIASFSFITIQLLGIIAVMSQAAWQVFVVFIPVIMVSICYQQYYIPSARELSRLVGVSKAPLIQHFSETISGTSTIRSFDQQSRFREINMKLSDGYSRPKFNIAGAMEWLCFRLDMLSSIIFAFSLIFIISVPPGFIDPGLAGLAVTYGLNLNNIQALMIWNLCKMESKIISVERILQYTCIPSEPPLVIDENQPDSSWPSNGEVDIQDLQVRHAPHLPLVLCGLTCKFHGGLKTGIVGRTGSGKSTLIQTLFRIVEPAAGKVMIDNINICSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEHTDEEIWEALDKSQLGDEVRKKEGKLDSKVSANGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFADSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTKLLENKSSSFAQLVAEYTMRSKFSFEESDDH* 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0151 1498 Gene3D - 1231 1484 IPR027417 -
Vra6g0151 1498 Gene3D ABC transporter type 1, transmembrane domain 285 604 IPR036640 GO:0005524|GO:0016021
Vra6g0151 1498 MobiDBLite consensus disorder prediction 874 901 - -
Vra6g0151 1498 CDD ABC_6TM_ABCC_D2 929 1223 IPR044726 GO:0140359
Vra6g0151 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 841 IPR027417 -
Vra6g0151 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 842 IPR003439 GO:0005524
Vra6g0151 1498 SUPERFAMILY ABC transporter transmembrane region 930 1230 IPR036640 GO:0005524|GO:0016021
Vra6g0151 1498 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Vra6g0151 1498 Pfam ABC transporter 1268 1413 IPR003439 GO:0005524
Vra6g0151 1498 Pfam ABC transporter 637 771 IPR003439 GO:0005524
Vra6g0151 1498 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 83 1494 - -
Vra6g0151 1498 SMART AAA_5 646 819 IPR003593 -
Vra6g0151 1498 SMART AAA_5 1274 1467 IPR003593 -
Vra6g0151 1498 SUPERFAMILY ABC transporter transmembrane region 300 607 IPR036640 GO:0005524|GO:0016021
Vra6g0151 1498 MobiDBLite consensus disorder prediction 878 901 - -
Vra6g0151 1498 CDD ABCC_MRP_domain2 1246 1466 - -
Vra6g0151 1498 Gene3D - 607 860 IPR027417 -
Vra6g0151 1498 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524
Vra6g0151 1498 CDD ABCC_MRP_domain1 621 819 - -
Vra6g0151 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1211 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g0151 1498 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 83 1494 - -
Vra6g0151 1498 Gene3D ABC transporter type 1, transmembrane domain 892 1229 IPR036640 GO:0005524|GO:0016021
Vra6g0151 1498 Pfam ABC transporter transmembrane region 931 1171 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g0151 1498 Pfam ABC transporter transmembrane region 307 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g0151 1498 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g0151 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1240 1479 IPR027417 -
Vra6g0151 1498 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1248 1482 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0151 Vra-Chr6 1078105 1084162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0151 592 835 Calmodulin-binding Proteins AT2G36910 31.179 4.19e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0151 - K05666 gmx:100777836 2450.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0151 6 1078105 1084162 Vra6g0151 6 1078105 1084162 ECH
Vra6g0151 6 1078105 1084162 Vra10g0282 10 7305722 7311596 PCT