Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0145 ATGTTGACCAAAGCAACTTCTTACAAATTAATACACAGAAATTATTTCCATAAAAATATTCCATCCAGTGTTCGTACAATGGTTGCTGATGAGTTCTTTATAAACTTAAACCAGACCAACAAAATCACTCCTTCATGCATGATTCTCTTCATCAATTTCTTCATTCTCATTCTTAGTGTTATCATTTCTCTCACTCCCTGGAATTCAAATCCTTCGATATTATTTCCTTTATCACATTACCAAGTTATTAAAGTGTGTTGTTTAGTAGTTGGAGGAGGAATGAGTAAGATAAGGCTGATGTTATTATCATCAGGTTTGGTTTTCTTGGTGTTGTTGTTGAAGTGTGTTGGTGATACTGATAGCGATCATGCTGGAAACGTGATTACGTGGGATGATTTCATGGTGGATGAAAAGGATACAACATCCAACGTTGGTGGTCGAGTTATTGTGGTCGATCAAAGTGGTAACGGAGATTCAACAACAGTTCAAGCAGCTGTAGATATGGTTCCGCAAAACAACACCCAGAGGGTCAAGATATACATATATCCTGGAATATATAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTCATTTCATTAATAGGTAAACCTAACATAACTACGAATGCAAATATAGCGGCTATAGGTAATGGCATTGGCATAGTTATTATCACAAACAGTACAAAGGCATCAGACAAAGACTCCAACGGCCAAGAAATGGGCACAATTAGTACAGCAACCGTATGGGTACAATCTGATTTTTTCTGCGCAACAGCTCTTACAATTCAGAATTTGGTAGATAAAGATGCAGATAAACGTCAAGCAGTAGCATTGCGTGTAGACGGTGATAAAGCTGTATTCTATGGAGTTAGGCTTGTGGGGGAGCAAGACACCCTCCTTGATAACACAGGAATCCATTATTTCTATAGAAGTTACATTCAAGGATCTGTTGATTTTATATTTGGCAATGCTAAATCGTTGTTTCATGAGTGTGTTGTATACTCTGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCACAGAGACTCAGAAGATGAAGATACAGGATTTTCATTTGTTAATTGCACAATCAAAGGAAGTGGTAGTGTGTTTCTTGGGAGAGCATGGGGGAACTATGCAACAACAATCTATTCAAACTGTGACATGGATGATGTTATTAATCCCTTGGGATGGAGCGATTGGGGTGATCCATCAAGACAAGGAACTGCAATGTTTGGAGAGTATGAGTGTTCAGGAAAAGGATCAAACAGAAGTGAGAGGGTGGAATGGTCGAAAGCTCTAAGCAGAGAAGAAGCTGAGCCTTTTCTGAGCACAGACTACATATATGGAGATGGATGGCTTAGACTATAG 1374 0.3908 MLTKATSYKLIHRNYFHKNIPSSVRTMVADEFFINLNQTNKITPSCMILFINFFILILSVIISLTPWNSNPSILFPLSHYQVIKVCCLVVGGGMSKIRLMLLSSGLVFLVLLLKCVGDTDSDHAGNVITWDDFMVDEKDTTSNVGGRVIVVDQSGNGDSTTVQAAVDMVPQNNTQRVKIYIYPGIYRERVHVPKSKPFISLIGKPNITTNANIAAIGNGIGIVIITNSTKASDKDSNGQEMGTISTATVWVQSDFFCATALTIQNLVDKDADKRQAVALRVDGDKAVFYGVRLVGEQDTLLDNTGIHYFYRSYIQGSVDFIFGNAKSLFHECVVYSVAEFWGAIAAHHRDSEDEDTGFSFVNCTIKGSGSVFLGRAWGNYATTIYSNCDMDDVINPLGWSDWGDPSRQGTAMFGEYECSGKGSNRSERVEWSKALSREEAEPFLSTDYIYGDGWLRL* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0145 457 Gene3D - 147 457 IPR012334 -
Vra6g0145 457 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 109 457 - -
Vra6g0145 457 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
Vra6g0145 457 SUPERFAMILY Pectin lyase-like 146 455 IPR011050 -
Vra6g0145 457 Pfam Pectinesterase 149 452 IPR000070 GO:0030599|GO:0042545
Vra6g0145 457 PANTHER PECTINESTERASE QRT1 109 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0145 Vra-Chr6 1025242 1027596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0145 147 408 Carbohydrate Esterase AT5G55590 61.364 1.58e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0145 K01051 - gmx:100775690 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0145 6 1025242 1027596 Vra6g0145 6 1025242 1027596 ECH