Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0144 ATGATGACGATGCAGTTGATGTCTTCCGGAGTTGTGTTCTTGTTTGTGATGGTTTTCTTGACGTGGGTTCATGCGGTTTTAGCAGAAGGTGAAAATGGCCATGGTGGTATTAGGAACTACATTAGTTGGGAAGATTTGCAGGTGGATGAGCAAAGGTTAACTTTGAAGCGTCATGATGATGTTAGAGTTATTATTGTTAACAAATATGGTTGGGGGCACTCCAAAACTGTTCAAGGTGCCGTGGATATGGTTCCTGATAATAACAAACATAGGGTGAAAATTTACATTTATCCAGGAGTTTACAGAGAGAAAGTGCGTGTGCCTGTGAGCAAGCCTTATGTATCATTCATAGGGAAAAGAAACCAAACAGCAACTCCTGTTATTACTTGGAACAGTAAGTCATCTGATAAAGGCACAAATGGCCAAGCATTGGGCACCTTTGATACAGCAACAGTTGGAGTGGACTCAGATTATTTCTGTGCAAGTGGGGTCACTTTTGAGAATTCAGTGATTGCAACGGCTGGTGTGAAAGGGATGCAAGGAGTGGCACTGAGGGTGAACAGTGCAAGAGCCATGTTCTATCAAGTGAAGATAAAGGGAGCACAGGACAGTCTCTTAGACAACACAGGAAGCCATTACTTCTTAAAGTGCCACATCCTAGGAAAAGTTGATTTTATCTTTGGCAATGCAAAATCACTGTATGAGAATTGCCTTCTTGAGTCAATAGCAGACAACTTTGGAGCGATAGCAGCACATCATAGGAATTCAGCAACTGAAGACACAGGTTTTTCTTTTGTGGGGTGCAGTATCAGAGGAAGTGGCAGAGTATACCTTGGCAGAGCATGGGGGAACTACTCTAGAATTATATACTCCAAATGTACTATGGATGACATTATTATTCCTGAAGGGTGGTCAGATTGGAATCACTCAGATAGAAAGAAGACTGCAGTGTTTGGGGAGTATGAATGCAATGGAAAAGGAGCAGATAGAAACAAAAGGACAGCTTGGTCAAAATCATTCAGCTATGATGAAGCAGTGCCTTTCCTTCAGAAGAGTTTCATAGATGGAGACCAGTGGCTAAGACTATAA 1089 0.4197 MMTMQLMSSGVVFLFVMVFLTWVHAVLAEGENGHGGIRNYISWEDLQVDEQRLTLKRHDDVRVIIVNKYGWGHSKTVQGAVDMVPDNNKHRVKIYIYPGVYREKVRVPVSKPYVSFIGKRNQTATPVITWNSKSSDKGTNGQALGTFDTATVGVDSDYFCASGVTFENSVIATAGVKGMQGVALRVNSARAMFYQVKIKGAQDSLLDNTGSHYFLKCHILGKVDFIFGNAKSLYENCLLESIADNFGAIAAHHRNSATEDTGFSFVGCSIRGSGRVYLGRAWGNYSRIIYSKCTMDDIIIPEGWSDWNHSDRKKTAVFGEYECNGKGADRNKRTAWSKSFSYDEAVPFLQKSFIDGDQWLRL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0144 362 Gene3D - 60 362 IPR012334 -
Vra6g0144 362 PANTHER PECTINESTERASE QRT1 17 362 - -
Vra6g0144 362 SUPERFAMILY Pectin lyase-like 63 360 IPR011050 -
Vra6g0144 362 Pfam Pectinesterase 64 357 IPR000070 GO:0030599|GO:0042545
Vra6g0144 362 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0144 Vra-Chr6 1016699 1019607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0144 1 314 Carbohydrate Esterase AT5G55590 50.898 6.45e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0144 K01051 - gmx:100804220 566.229