Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0136 ATGGCTGACTCGGACAACGACTCGGAGGGAGCGCAGAACGCGGGAAACAGCAGCTTCAGCGACTTATCGCCTCGGGAACAGGAACGCTTCCTGCCACTCGCCAACGTAACCAGGCTCATGAAAAGGGCTATACCGGCGAACGCCAAGATCTCCAAGCACACCAAAAAGACCATGCTGGAATGCGTGTCGGAGTTCATAATTTTCATAACCGACGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCCATGACCTCCTTAGGATTCGAGGACTACGCCAAGTTTCTCAAAATTTACCTCCAGCGATTCCGCGAGATCGAGGGAGAGAAGACCGTCGCCGCACGAGACAAGGACGCCGCCTCCTCCTCCTCCGTGAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCATGATGCATCATCTGTGA 459 0.5686 MADSDNDSEGAQNAGNSSFSDLSPREQERFLPLANVTRLMKRAIPANAKISKHTKKTMLECVSEFIIFITDEASDKCQREKRKTINGDDLLWAMTSLGFEDYAKFLKIYLQRFREIEGEKTVAARDKDAASSSSVSGYDYSPSSAAAMMHHL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0136 152 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vra6g0136 152 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vra6g0136 152 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vra6g0136 152 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 136 - -
Vra6g0136 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra6g0136 152 SUPERFAMILY Histone-fold 27 131 IPR009072 GO:0046982
Vra6g0136 152 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g0136 152 Gene3D Histone, subunit A 19 141 IPR009072 GO:0046982
Vra6g0136 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0136 Vra-Chr6 987899 988969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0136 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.774 1.14e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra6g0136 CBFD_NFYB_HMF 1.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0136 K08065 - gmx:100500556 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0136 6 987899 988969 Vra6g0136 6 987899 988969 ECH
Vra6g0135 6 980074 981299 Vra6g0136 6 987899 988969 PCT