Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0135 ATGGCTGACTCGGACAACGACTCGGGAGGAGCGCAGAACGCGGGGAACAGCGGCTTCAGCGAGTTATCGCCTCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTAAGCAGGATCATGAAAAAGGCTCTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATAACCGGCGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCGATGACCACCTTAGGATTCGAGGACTACGTGGAGCCTCTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTCGCCGCACGCGACAAGGACGCCGCCGCCTCCTCCTCCGTGAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCATGATGCATCATCCGGGCCACGTCTACGGGTCCCCCGCGTTCCATCAAGTGAGTGCCCCTCCCGTTATGGGTAAGCCTGGACCTGGGCCTGGGCCTGGTCCCGGGCCCAGTTATCCTGCCCCTGGTAGACCCAGATAA 579 0.6079 MADSDNDSGGAQNAGNSGFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKTVAARDKDAAASSSVSGYDYSPSSAAAMMHHPGHVYGSPAFHQVSAPPVMGKPGPGPGPGPGPSYPAPGRPR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0135 192 MobiDBLite consensus disorder prediction 170 192 - -
Vra6g0135 192 MobiDBLite consensus disorder prediction 157 192 - -
Vra6g0135 192 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra6g0135 192 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 149 - -
Vra6g0135 192 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vra6g0135 192 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vra6g0135 192 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vra6g0135 192 MobiDBLite consensus disorder prediction 1 26 - -
Vra6g0135 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra6g0135 192 Gene3D Histone, subunit A 19 142 IPR009072 GO:0046982
Vra6g0135 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vra6g0135 192 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g0135 192 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0135 Vra-Chr6 980074 981299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0135 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.290 1.19e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra6g0135 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0135 K08065 - gmx:100500556 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0135 6 980074 981299 Vra6g0136 6 987899 988969 PCT