Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0132 ATGGGGACGTGCATGTGCATGGTTGTCTTCTTCATCTTCATGCTCTTCTTGGGCGCTCTGTGTGAGGTGGCAGCCATACAAAACAACGTCGGCTTCGACTTCCCTTCTTTCACCCTCGACAACAACAACATCACCCTCCTCGGCGATTCCTTTTTATGGAGCAATGGCGTCGTAAGACTCACAAACGTCGCTTCCACTTCCAGCACCGGCGCCGTCATCTACGCCTACCCCATCCCACTCTTCCATCCTCCAACCACCTTCGCCTCCTTCTCCACCACCTTCACCTTCTCCATCAACAACCTCAACCCCGCCTCCTCAGGCGACGGCCTTGCCTTTTTCCTCTCCCCCAACACCACCTCCACCAATCTCTCCCTCTCCGCTCCACTCGGCCTCCCCTCCTCCTTCGTCGCCGTCGAGTTCGACACGCACTTGGACTCCCGCTTCGGCGACCCTAACGAGAACCACGTCGGCTTCGACGTCGACTCCATGAAGTCCCTCAAAACCGGTGACCCCATCTTGCACGGCATCGACCTCAAGAGCGGCAACACCATCATCGCATGGATCGACTACGACGCCGGTCGAACTTCTCTCACCGTTTTCTTGAGCTATTCACTTCCAAAACCCGTGGACCCCGTCCTCTCTGTAAAGTTCAATCTTTCTCAACACTTGAGAAACCCCGTCTACATTGGATTCTCCGCTTCCACTCAAGGAATTACCGAGATTCACCAAATCCAGAGTTGGACCTTTCACAGTGCTTGTGCTCCCGCAAGAACGAGGTTGCACCCTCACAATGTTTCCGTGGTGGGAACTGTACCTATTTCTGGTTCGGGTTCGGGTTCTGGTTCTGGTGGTTCTGGTTCTGTTTCTAGTCCAAGCACTAATTCTACTTCCAAGAAGCATGACAAGAGGGTTGGCTTTGGTGTGGTTGTTGGGGGATCGGTCTCTTTCTTTGTGGTTTTTTCAGTCTTGGGGTATGTTTTTGTTCGGAGATCGAGGGGTGGGAGAGAAGAAAAGTTTGAGAATGGTTTCGTGGCATGTCCTAGGGCGTTCGATTACAAAGAGTTGAAGTCTGCGACAAGAGAGTTTCATCCGAGCAGGATTGTTGGGCACGGATCATTTGGGACGGTGTATAAGGCGTTCTTTATCTCTTCCGGAACCATTGCTGCAGTGAAAAGGTCGCGGCACTCTCACGAAGGGAAGACCGAGTTTCAGGCTGAACTATCCATCATAGCCGGTTTGCGGCACAAGAATTTGGTTCAGCTGCAAGGTTGGTGTTTTGAGAAGGGAGAGTTATTGCTGGTGTATGAGTTTATGCCCAATGGAAGTTTAGACAAGATGCTTTACAAGGAGCCTGAAGTGGGGAGGTTGCTGAGTTGGTCTCACAGGATGAAAATTGCTGTTGGGTTGGCCTCTGTGCTGGTTTACCTTCACCAAGAGTGTGAGAGGAGAGTAGTTCACAGGGACATTAAGACTGGGAACATATTGCTGGATGGAAACATGAATCCTAGGTTGGGGGATTTTGGATTGGCAAAGCTGATGGATCATGATAAGAGTCCTGTGTCCACTTTGACTGCTGGAACAATGGGGTACCTTGCCCCTGAGTATCTTCAGTATGGAAAGGCCACTGACAAGTCTGATGTTTTCAGCTATGGGGTGGTTGTGCTTGAAGTGGCTTGTGGAAGGAGGCCAATTGAGAGAGAAGGGTCCAAAATGGTGAATCTGATTGAGTGGGTTTGGGGGTTGCATTCTGAAGGGAAGGTGATTGAAGCTGCTGATAAGAGGTTGAATGGCGAATTTGAGGAAGAGGAAATGAGGATGCTTTTACTCTTGGGATTGAGTTGTGCTAACCCTGATACTGCTGGGAGGCCTTCCATGAGAAGGGTGCTCCAGATTCTGAACCATGAGGCTCCACCAATTACTGTGCCAAAAGTTAAGCCAACACTCACCTTCTCCTCTGCACTTCCCCTCACTATTGAGGACATTGTTTCTGACACTGAAGAAGTGTTCAGTACCAGCAGGTCTGTGTGTGAGATCAACTTTGACTGA 2046 0.5044 MGTCMCMVVFFIFMLFLGALCEVAAIQNNVGFDFPSFTLDNNNITLLGDSFLWSNGVVRLTNVASTSSTGAVIYAYPIPLFHPPTTFASFSTTFTFSINNLNPASSGDGLAFFLSPNTTSTNLSLSAPLGLPSSFVAVEFDTHLDSRFGDPNENHVGFDVDSMKSLKTGDPILHGIDLKSGNTIIAWIDYDAGRTSLTVFLSYSLPKPVDPVLSVKFNLSQHLRNPVYIGFSASTQGITEIHQIQSWTFHSACAPARTRLHPHNVSVVGTVPISGSGSGSGSGGSGSVSSPSTNSTSKKHDKRVGFGVVVGGSVSFFVVFSVLGYVFVRRSRGGREEKFENGFVACPRAFDYKELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFQAELSIIAGLRHKNLVQLQGWCFEKGELLLVYEFMPNGSLDKMLYKEPEVGRLLSWSHRMKIAVGLASVLVYLHQECERRVVHRDIKTGNILLDGNMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKSDVFSYGVVVLEVACGRRPIEREGSKMVNLIEWVWGLHSEGKVIEAADKRLNGEFEEEEMRMLLLLGLSCANPDTAGRPSMRRVLQILNHEAPPITVPKVKPTLTFSSALPLTIEDIVSDTEEVFSTSRSVCEINFD* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0132 681 SMART serkin_6 362 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0132 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 251 IPR013320 -
Vra6g0132 681 MobiDBLite consensus disorder prediction 276 295 - -
Vra6g0132 681 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Vra6g0132 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Vra6g0132 681 MobiDBLite consensus disorder prediction 276 300 - -
Vra6g0132 681 CDD lectin_legume_LecRK_Arcelin_ConA 32 251 IPR001220 GO:0030246
Vra6g0132 681 SUPERFAMILY Protein kinase-like (PK-like) 345 652 IPR011009 -
Vra6g0132 681 CDD STKc_IRAK 368 633 - -
Vra6g0132 681 Pfam Legume lectin domain 31 257 IPR001220 GO:0030246
Vra6g0132 681 Gene3D - 28 253 - -
Vra6g0132 681 ProSiteProfiles Protein kinase domain profile. 362 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0132 681 Gene3D Phosphorylase Kinase; domain 1 328 437 - -
Vra6g0132 681 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Vra6g0132 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 27 653 - -
Vra6g0132 681 Gene3D Transferase(Phosphotransferase) domain 1 438 651 - -
Vra6g0132 681 Pfam Protein kinase domain 363 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0132 681 PANTHER - 27 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0132 Vra-Chr6 964738 967212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0132 7 667 Receptor kinase-like Gene Family AT5G55830 55.362 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra6g0132 Pkinase 6.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0132 - - gmx:102668712 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0132 6 964738 967212 Vra6g0132 6 964738 967212 ECH
Vra6g0132 6 964738 967212 Vra6g0132 6 964738 967212 PCT