Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0116 ATGAATTCTAGGTGCTTCCTTCATCCACAACAAGACTTTAGCATGGTTCCATTTTCTTCAAATTCTGTCACAGAAGATAGAGTGGCTAGTGCTCGAAATAGGCCTCCACGTGTCACCCCTCCTTCCTTCTTGGTTCGGGTGGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTGAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGGTTGTTCAAATAACTATTACAACATTCACTTTAGCCATTTCCAAGAGGGAGAGACCTATTTGGCCGATGAGGATTTGGATTTCTGGTTATGATATTGGTGTTGTTCTTAATCTGCTGCTACTTTACGGGCGCTATCGTCAAATTTATCTCACGCAAGGCCTTTCTGATATAGAACAGCAGAGAAACAATGAAGAAACCAGTGTGTACAGGATGTCACACTTGATGAACAGATGTCGGACTTCACTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCAACAAGCTCCAAAACTGCATGTGCTCTGCATCACTCTTCTTGCTTGGAATGCAGTGTGCTACTCTTTCCCTTTTCTACTGTTTCTGCTGCTATGCTGTTTTGTGCCACTCATCAGCACCCTCCTTGGCTACAACATGAATATAGCCTCTTTTGATAAAGGAGCTTCTGATGATCAAATTTCACAGCTTCCAAGCTGGAGACATAAAGAAGGTCGTGCGAAGTTAGAGCTTGGAAATGACTCTGATGGGAGTGAAAAACTGATTGACGAAGACCAAGAATGTTGTATCTGCTTAACCAAGTATAAAGACAAAGAGGAAGTTAGACAATTGCCCTGTTCCCATGTGTTCCATCTAAAATGTGTGGATCAATGGCTAAAAATTACATCATGCTGTCCTCTTTGCAAGCAAGGATTGGAGATGTAG 1014 0.4162 MNSRCFLHPQQDFSMVPFSSNSVTEDRVASARNRPPRVTPPSFLVRVAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALVVQITITTFTLAISKRERPIWPMRIWISGYDIGVVLNLLLLYGRYRQIYLTQGLSDIEQQRNNEETSVYRMSHLMNRCRTSLELFFAIWFVMGNVWVFDSRFGSFQQAPKLHVLCITLLAWNAVCYSFPFLLFLLLCCFVPLISTLLGYNMNIASFDKGASDDQISQLPSWRHKEGRAKLELGNDSDGSEKLIDEDQECCICLTKYKDKEEVRQLPCSHVFHLKCVDQWLKITSCCPLCKQGLEM* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0116 337 Pfam Ring finger domain 290 332 IPR001841 -
Vra6g0116 337 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 336 - -
Vra6g0116 337 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
Vra6g0116 337 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 24 336 - -
Vra6g0116 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 336 IPR013083 -
Vra6g0116 337 SMART ring_2 291 331 IPR001841 -
Vra6g0116 337 SUPERFAMILY RING/U-box 282 335 - -
Vra6g0116 337 CDD RING-H2_RNF111_like 290 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0116 Vra-Chr6 824637 827698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0116 35 335 C3H Transcription Factor Family AT4G26580 68.301 4.64e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0116 - - gmx:100813670 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0116 6 824637 827698 Vra6g0116 6 824637 827698 ECH