Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0114 ATGTCTTTAAGCTTGAGGAATCTCTCACCTTCTTCCAAAATCTTCTCCCTCTCTTTGCTTCTTTTATTTCATTGTTGTTACTCCCAGCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAAAACAGTTTAAACAGTTCTGCAGATGCATTAGTATCTTGGAATCCTTCCAGCACAACCCCATGCAATTGGTTTGGGGTGCGCTGCAACTTAGAAGGAGAGGTGGTTGAGATAAACCTGACTTCAGTCAACTTGCAAGGCTCGTTACCCTCAAATTTTCAACTTTTCAGGTCCTTGAAGATTCTTGCCCTCTCAGCAGCCAACATCACAGGCAGGATTCCCAAGGAGATTGGAGACTGTAAAGAGCTCATTTCCATTGATCTCAGTGGCAATTTTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTAGCTCTGCATACCAACTTTCTTGAAGGCAACATTCCATCCAGCATAGGAAATTTATCGAGTCTGGTGAACTTGACACTCTATGACAACAAACTGAGTGGCGAAATTCCAAAGAGTATTAGCTCATTAACTGAGCTCCAAGTGTTGAGAGTAGGAGGGAACACAAACCTTAAGGGTGAGGTGCCATGGGATATTGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAATCTTCCTTCTTCAATAGGGATGCTGAAAAGAGTTCAAACCATAGCCATTTACACAACTCTGCTGTCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCCGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTAAGAATCTTCTCTTGTGGCAAAACAATATAGTTGGTATAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTGGAAGTCATAGACATGTCAGAAAATCTTCTCACTGGTAGCATACCAACCAGTTTTGGTAAGCTATCAAATCTGCAAGGGCTTCAACTGAGTGTTAACAAGCTTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAACTGGAAGTTGACAATAATGCTATCTCTGGAGAGATTCCTCCTGGTATCGGAAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTGACAGGAAAAATCCCAGATAGTCTTTCTCAGTGCCAAGATCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGACTGAGGAACCTCACTAAACTGCTGCTTCTTTCCAATGATTTGTCTGGCTTTATACCACCTGAGATAGGTAATTGCACAAGCCTCTACAGGTTGAGGTTAAATCACAATAGACTGTCAGGTACAGTTCCATCTGAGATCACCAACTTGAAGAATTTGAACTTTTTGGACGTGAGCAGCAATCATCTTGTAGGGGAAATTCCTCCTACACTATTCAGATGCCAAAACCTTGAGTTTCTGGACCTTCACTCAAACAGTCTTATTGGCTCAGTTCCAAACAATCTGCCCAAAAACCTGCAGTTAATCGACCTCTCAGACAACAGGCTAACAGGTGAACTGAGCCATTCCATTGGTTCATTAACCGAGTTAGCCAAACTCAACTTGGGAAAGAATCAACTCAGCGGAAGCATCCCTGCTGAGATCCTATCTTGCTCCAAGTTACAACTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCGAGGAAATTGCTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGCTGTAACCAGTTTTCTGGTGAAATTCCACCCCAGTTCTCCAGTCTTAGAAAACTTGGAGTGCTAGACCTCTCCCACAACAAGCTCTCAGGGAAGTTGGATGCTCTCTCTGACCTTCAAAATCTTGTTTCGTTAAATGTTTCCTTCAATGACTTCACCGGAGAATTGCCTAACACCCCATTCTTCAGGAAGCTCCCTCTCAGTGATCTCACAGGAAATGATGGCCTCTACATTGTTGGTTCTATAACTCCGGCTGACAGAAAGGAAGCCAAGGTTCATGCCAGGTTGTTTATGAAAATTATATTATCCATTCTCTTAAGCTCCAGTGCAGTACTAGTACTGCTCACAATCCATGTCTTGATTCGTGCTCATGTTTCTAACAAAGCACTCATGGGAAACAACAATTGGGTGCTAACTCTGTATCAGAAGTTTGAATTCTCAGTTGATGATATTGTCCGGAATTTGACTTCATCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTTACAGTTCCAAATGGCCAAACACTAGCAGTGAAAAAGATGTGGTCATCGGCAGAGTCAGGAGCATTTACTTCCGAAATTCAAACACTGAGTTCAATTAGACATAAAAACATCATCAAGCTTCTGGGTTGGGGGTCCAGCAAGAACATGAAGCTGCTGTTTTATGAGTACCTCCCTAACGGAAGCCTGAGCTCATTACTTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAAATCAGATATGATGTTATGGTAGGAGTGGCTAATGCACTTGCATATTTGCACCATGATTGTGAGCCTTCCATATTGCATGGAGATGTCAAAGCCATGAACGTGCTGTTAGGTCCTGGCTATCAGCCTTACCTATCTGACTTTGGCCTAGCTAGAATTGCAAGTGAAAATGGTGATTGTACAAATTCCAAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGGTACATGGCTCCAGAACATGCATCTATGCAGCAGATCACTGAGAAGAGTGATGTGTACAGTTTTGGGGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTTGACCCAACACTTCCTGGAGGTGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCAAGCAAAGGAGACCCATCTGACATTCTTGACCCAACACTCATAGGAAGAACTGATTCCACTGTGCATGAAATGTTACAAGCTCTAGCTGTCTCATTTCTATGTGTCAGCACCAGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTTAGGGAAATCCGATTTGCTGAGGCACCAACCACAGCTTCTGATGCATCGAATGGAGTTTCAACAGTGCATGCTTCTCCATTACCTCTTAAAACTGTAGTTTCACATGGAACTTCTAAATGTTCCTTTAATTTTTCTGAGGACTCAATCTGTTGA 3270 0.4343 MSLSLRNLSPSSKIFSLSLLLLFHCCYSQLNEQGQALLAWKNSLNSSADALVSWNPSSTTPCNWFGVRCNLEGEVVEINLTSVNLQGSLPSNFQLFRSLKILALSAANITGRIPKEIGDCKELISIDLSGNFLFGEIPEEICRLSKLQTLALHTNFLEGNIPSSIGNLSSLVNLTLYDNKLSGEIPKSISSLTELQVLRVGGNTNLKGEVPWDIGNCTNLVVLGLAETSISGNLPSSIGMLKRVQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLKNLLLWQNNIVGIIPEELGSCTQLEVIDMSENLLTGSIPTSFGKLSNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAISGEIPPGIGNLRSLTLFFAWQNKLTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLSGTVPSEITNLKNLNFLDVSSNHLVGEIPPTLFRCQNLEFLDLHSNSLIGSVPNNLPKNLQLIDLSDNRLTGELSHSIGSLTELAKLNLGKNQLSGSIPAEILSCSKLQLLDLGSNSFSGEIPEEIAQIPSLEIFLNLSCNQFSGEIPPQFSSLRKLGVLDLSHNKLSGKLDALSDLQNLVSLNVSFNDFTGELPNTPFFRKLPLSDLTGNDGLYIVGSITPADRKEAKVHARLFMKIILSILLSSSAVLVLLTIHVLIRAHVSNKALMGNNNWVLTLYQKFEFSVDDIVRNLTSSNVIGTGSSGVVYKVTVPNGQTLAVKKMWSSAESGAFTSEIQTLSSIRHKNIIKLLGWGSSKNMKLLFYEYLPNGSLSSLLHGSGKGKAEWEIRYDVMVGVANALAYLHHDCEPSILHGDVKAMNVLLGPGYQPYLSDFGLARIASENGDCTNSKPVQRPYLAGSYGYMAPEHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGGAHLVQWVRNHLASKGDPSDILDPTLIGRTDSTVHEMLQALAVSFLCVSTRAEDRPTMKDTVAMLREIRFAEAPTTASDASNGVSTVHASPLPLKTVVSHGTSKCSFNFSEDSIC* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0114 1089 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Vra6g0114 1089 Pfam Protein kinase domain 766 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0114 1089 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1054 - -
Vra6g0114 1089 Gene3D Phosphorylase Kinase; domain 1 732 836 - -
Vra6g0114 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672|GO:0006468
Vra6g0114 1089 Gene3D Ribonuclease Inhibitor 188 327 IPR032675 -
Vra6g0114 1089 Gene3D Ribonuclease Inhibitor 428 526 IPR032675 -
Vra6g0114 1089 Gene3D Ribonuclease Inhibitor 527 604 IPR032675 -
Vra6g0114 1089 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Vra6g0114 1089 SUPERFAMILY RNI-like 319 666 - -
Vra6g0114 1089 Gene3D Transferase(Phosphotransferase) domain 1 837 1060 - -
Vra6g0114 1089 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1054 - -
Vra6g0114 1089 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515
Vra6g0114 1089 SMART LRR_sd22_2 313 342 - -
Vra6g0114 1089 SMART LRR_sd22_2 168 194 - -
Vra6g0114 1089 SMART LRR_sd22_2 527 553 - -
Vra6g0114 1089 SMART LRR_sd22_2 624 649 - -
Vra6g0114 1089 SMART LRR_sd22_2 265 291 - -
Vra6g0114 1089 SMART serkin_6 763 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0114 1089 Gene3D Ribonuclease Inhibitor 605 690 IPR032675 -
Vra6g0114 1089 Gene3D Ribonuclease Inhibitor 328 427 IPR032675 -
Vra6g0114 1089 SMART LRR_typ_2 481 505 IPR003591 -
Vra6g0114 1089 SMART LRR_typ_2 168 192 IPR003591 -
Vra6g0114 1089 SMART LRR_typ_2 362 385 IPR003591 -
Vra6g0114 1089 SMART LRR_typ_2 337 361 IPR003591 -
Vra6g0114 1089 SMART LRR_typ_2 289 313 IPR003591 -
Vra6g0114 1089 SMART LRR_typ_2 624 647 IPR003591 -
Vra6g0114 1089 SMART LRR_typ_2 433 457 IPR003591 -
Vra6g0114 1089 SMART LRR_typ_2 551 575 IPR003591 -
Vra6g0114 1089 PRINTS Leucine-rich repeat signature 412 425 - -
Vra6g0114 1089 PRINTS Leucine-rich repeat signature 624 637 - -
Vra6g0114 1089 ProSiteProfiles Protein kinase domain profile. 763 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0114 1089 SUPERFAMILY Protein kinase-like (PK-like) 753 1039 IPR011009 -
Vra6g0114 1089 Pfam Leucine rich repeat 606 660 IPR001611 GO:0005515
Vra6g0114 1089 Pfam Leucine rich repeat 291 341 IPR001611 GO:0005515
Vra6g0114 1089 Pfam Leucine rich repeat 388 446 IPR001611 GO:0005515
Vra6g0114 1089 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vra6g0114 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 792 IPR017441 GO:0005524
Vra6g0114 1089 SUPERFAMILY RNI-like 77 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0114 Vra-Chr6 803285 807014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0114 26 1088 Receptor kinase-like Gene Family AT5G56040 64.459 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra6g0114 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0114 - - gmx:100813139 1859.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0114 6 803285 807014 Vra6g0114 6 803285 807014 ECH