Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0111 ATGCCACAGGAAAGTTTACTGAGCTCGATTTTCGCATCTCCTCATAAGAGAGGATTAAATTTGAAAGGTTCGGCTTCAGTTTGTAACAACAATGAGGCTTCATACCCTGTGATGGCGGAGGAGAGCATCAACGATCATGAATTGGCTCAGAGGAAAGCAGGGGAAGCAGCTTCAAGGAGATACGAAGCAGCAGAATGGCTTCGCCAAATGGACAATGGCGCATCTTCATCTCTTTCCAAAGAACCCTCCGAAGAGGAATTCTGCCTCGCACTCCGCAACGGTCTCATTCTCTGCAACGTCCTCAACAGAGTCAACCCTGGCGCTGTCGTCAAGGTTGTCGACAATGCGGTGGTCGACAACCTCGCCCTTCAGTCTTCAGAGGGACCCGCCCAGTCCGCAATTCAGTATTTCGAGAACATGCGAAACTTTCTGGAGGCGGTCAACGACATGAAGCTTTTGACATTCGAAGCTTCTGATTTGGAAAAGGGGGGTTCGTCGAGCAAAGTTGTGGACTGCATTCTCTGTTTGAAAGGGTATTATGAATGGAAGCTGTCGGGTGGAGTCGGTGTATGGAGATATGGTGGAACTGTCAGGATTACTTCCTTCCCCAAATGGTCTCCTTCCAACATACTCGGCACTGAAAGTGTTGATGAGTCCGAGTCATCACAGTTTCTTCATCTGTCTGGAGAGGTGTCGATTGAAGAAACCAAAGCTGCTAATGCTTTGACTTCCCTTTTTGATCAGTTTGGACTCAAGCTTCTCCTGGCTTACCTCAAAGAGACTGATGGGGTTGATGATCTACCGTTGAATGCAATGGTAATAGATTCTTTACTCAAGAAGGTTATCAGGGATTTTTCTGCATTACTTAATTCTCAAGGCACTCAGCTTGGACATTTCCTCAAGAAAATATTGAAAGGCGGTACCGGTTGCCTCTCTAAGAGAGAATTCGTGGAGGCTATCACATTATATCTTAATCAAGGACGTAGTTTCGCATCAAATGAAATCTCTAAACTATGCACTTGCGGTGGAAAACGCGATAATAATCAGCACAGTGTCCAATATTGTGCCAAGCATGCTGAAATAATTGATGCCCAGCAAAAAGAGCTTGAGGGACTGAGGTACTTCTATGAAGGGATAAAATCGGAGCTCAAACAAATTCAATCAAAGTGGGACCAAGAATTGAACAGGCTTGAGAATCATATAAAGAGCCTTGAAGAGGCTTCCTCTTCGTATCACAAAGTTCTGGAGGAGAATCGTTTTCTTTACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTCTACTGTAGAGTGAGGCCCTTCTTGCCAGGACAACCAAATGGACAATCTACTGTAGATTATATAGGAGAAAATGGAAACATAATGATTACGAATCCCCTTAAGCAAGGAAAAGATGCTAGAAGGGTATTTTCATTCAATAAGGTGTTTGCAACAAGTGCCACCCAAGAAGAAATATACGCTGACACCCAACCATTGGTTAGGTCTGCCTTAGATGGATATAATGTATGCATCTTTGCATATGGACAGACTGGGTCAGGAAAAACCTACACAATGAGTGGTCCTGATCTGATGACTGAAGAGACATGGGGTGTAAACTACAGGGCTTTGCGTGACTTATTTCATATTTCAAAGGAAAGAGCAGATGCCATAAAATATGAAGTTGGTGTCCAAATGATTGAAATATACAATGAGCAAGTGAGAGATTTATTAGTTAGCGATGGCTCCAACAGAAGATTGGATATACGAAACAACTCTCAGTTAAATGGGCTTAATGTGCCCGATGCATCTTTGGTTCCGGTTAATTGCACCCAAGATGTTATTGATTTAATGAAAGTTGGTCAGAGAAATCGAGCTGTTGGTGCTACCGCTCTAAATGAGCGAAGCAGCCGTTCTCATAGTGTGTTGACAGTTCATGTCAGAGGGAAGGACTTAATGTCTAACTCCATTCTTAAGGGTTGTCTCCATCTTGTGGATTTGGCTGGAAGTGAAAGAGTGGACAAATCGGAGGCTGTTGGGGAGAGACTGAAGGAGGCTCAGCATATAAATAAATCTCTTTCTGCACTTGGGGATGTTATCTCTGCTTTGGCACAGAAGAGTCAACATATTCCTTATAGAAATAGCAAGCTCACACAAGTTCTACAAGATTCATTAGGCGGTCATGCAAAAACTTTGATGTTTGTTCATATAAATTCTGAGCTTAATGCTCTTGGAGAGACAATAAGCACACTTAAGTTTGCGGAGAGGGTTGCGACCATTGAACTTGGAGCCGCTCAATCTAATAAAGAAACTGGAGAAATTCGGGAGCTAAAGGAAGAGATATCAAATATCAAATCAGCATTGGAGAGGAAGGAAACTGAACTACAGCAATGGAAAGCTGGGAATGCACGGAATCCCACGGAATCTCAGAAAGCACCCAGAGCTGTTTCACCTTTCCGTTTGCCCAAAAGTGGTACGAGTGACAGCATGAAGCCTGAAAACTACCAAAGACACATGGACGAGAGAAGCTCTGAGGCTAAAACTTGTTCATCGGGCAAGCAAAGAAGGTCAAGATTTCCCTCAATACATATAGAAAAGGAGTCAATGCCAAAAATGTCTATTCTGGCTGAAGAAAAAATAGTGAGCTCAGGGAAAAGTAGATCACCATCACCTCCAGTCCGGAGGAGATCAATATCCACTGATAGAGGGTCAGTCATTAAAAGCAAGGTCCGAAGTGACACAGCAGAAAACCAACCAACCCCAAAGCATCTACTTCCAGCTAGAGTACTAGTAAATAAATCTCTTGTCACAATGCCGATGCCCTCATCTATAGAGAATAACTCAAGGGTGAATCTGCACGCACAGGAGTCAGTGAAGCAAGATCGCATTACTGAAACTCTCTTCAACCTCCAGAAGATAAACTCCCGGAAAGTTAATCAAGAACATGAAGAGGAACAACTCAAGCAAGCTGCTCTTGGTGTGGCAAGACAAGGTGGAACTAGGAAAAACAAGGCTGACAGTAAGACCAAGGTTAAGCCTCATCAACAGTTTCCCTTTAGGATTCAAAAGCCTGATATGACGATACCTATTACTGACATGGAAAATGGCCGTGACACGGAGGCACCTCGAAAGAGCAATTATTGTGAGCCAGAGAATGATATAAACCTAATGGAGTCTGCAGTCCACGGTGTTAATCTTAAAAAGATAAATCACAATATCTCTAGGAATTTTCAGAACATTGGATCAAGAGGAATAGTCCAAGCAGCTGAACCATTATTGTCCAGCAAAGTTGAAAATAAAATATTACAACATGGTTCAGGACGCAATCTTAAGGAAGGCACCAACACTACATTGCCTGAATTTAGAAGGAGCCGATCTACGCCACGTGGAAAGTTTTTTGTTTTATCTTGA 3408 0.4305 MPQESLLSSIFASPHKRGLNLKGSASVCNNNEASYPVMAEESINDHELAQRKAGEAASRRYEAAEWLRQMDNGASSSLSKEPSEEEFCLALRNGLILCNVLNRVNPGAVVKVVDNAVVDNLALQSSEGPAQSAIQYFENMRNFLEAVNDMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKWSPSNILGTESVDESESSQFLHLSGEVSIEETKAANALTSLFDQFGLKLLLAYLKETDGVDDLPLNAMVIDSLLKKVIRDFSALLNSQGTQLGHFLKKILKGGTGCLSKREFVEAITLYLNQGRSFASNEISKLCTCGGKRDNNQHSVQYCAKHAEIIDAQQKELEGLRYFYEGIKSELKQIQSKWDQELNRLENHIKSLEEASSSYHKVLEENRFLYNQVQDLKGAIRVYCRVRPFLPGQPNGQSTVDYIGENGNIMITNPLKQGKDARRVFSFNKVFATSATQEEIYADTQPLVRSALDGYNVCIFAYGQTGSGKTYTMSGPDLMTEETWGVNYRALRDLFHISKERADAIKYEVGVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQLNGLNVPDASLVPVNCTQDVIDLMKVGQRNRAVGATALNERSSRSHSVLTVHVRGKDLMSNSILKGCLHLVDLAGSERVDKSEAVGERLKEAQHINKSLSALGDVISALAQKSQHIPYRNSKLTQVLQDSLGGHAKTLMFVHINSELNALGETISTLKFAERVATIELGAAQSNKETGEIRELKEEISNIKSALERKETELQQWKAGNARNPTESQKAPRAVSPFRLPKSGTSDSMKPENYQRHMDERSSEAKTCSSGKQRRSRFPSIHIEKESMPKMSILAEEKIVSSGKSRSPSPPVRRRSISTDRGSVIKSKVRSDTAENQPTPKHLLPARVLVNKSLVTMPMPSSIENNSRVNLHAQESVKQDRITETLFNLQKINSRKVNQEHEEEQLKQAALGVARQGGTRKNKADSKTKVKPHQQFPFRIQKPDMTIPITDMENGRDTEAPRKSNYCEPENDINLMESAVHGVNLKKINHNISRNFQNIGSRGIVQAAEPLLSSKVENKILQHGSGRNLKEGTNTTLPEFRRSRSTPRGKFFVLS* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0111 1135 Gene3D - 49 181 IPR036872 -
Vra6g0111 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 796 IPR027417 -
Vra6g0111 1135 MobiDBLite consensus disorder prediction 994 1013 - -
Vra6g0111 1135 PANTHER KINESIN-LIKE PROTEIN KLP-3 22 1130 - -
Vra6g0111 1135 CDD KISc_C_terminal 429 761 - -
Vra6g0111 1135 Coils Coil 766 800 - -
Vra6g0111 1135 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 22 1130 - -
Vra6g0111 1135 MobiDBLite consensus disorder prediction 798 924 - -
Vra6g0111 1135 SMART ch_5 59 179 IPR001715 GO:0005515
Vra6g0111 1135 Coils Coil 1134 1135 - -
Vra6g0111 1135 ProSiteProfiles Calponin homology (CH) domain profile. 57 181 IPR001715 GO:0005515
Vra6g0111 1135 ProSiteProfiles Kinesin motor domain profile. 431 759 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g0111 1135 Pfam Kinesin motor domain 437 759 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g0111 1135 PRINTS Kinesin heavy chain signature 506 527 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g0111 1135 PRINTS Kinesin heavy chain signature 629 646 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g0111 1135 PRINTS Kinesin heavy chain signature 660 678 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g0111 1135 PRINTS Kinesin heavy chain signature 709 730 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g0111 1135 Coils Coil 380 407 - -
Vra6g0111 1135 Coils Coil 969 989 - -
Vra6g0111 1135 Gene3D Kinesin motor domain 374 761 IPR036961 -
Vra6g0111 1135 Pfam Calponin homology (CH) domain 58 181 IPR001715 GO:0005515
Vra6g0111 1135 MobiDBLite consensus disorder prediction 882 896 - -
Vra6g0111 1135 SUPERFAMILY Calponin-homology domain, CH-domain 55 209 IPR036872 -
Vra6g0111 1135 SMART kinesin_4 429 767 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g0111 1135 MobiDBLite consensus disorder prediction 832 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0111 Vra-Chr6 786846 795733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0111 422 759 Calmodulin-binding Proteins AT5G65930 43.953 1.64e-77 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0111 K10406 - gmx:100811516 1914.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0111 6 786846 795733 Vra6g0111 6 786846 795733 ECH
Vra6g0111 6 786846 795733 Vra6g0111 6 786846 795733 PCT