Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0110 ATGGGAACTAAGTCAGTTGTGGATTTAATGGAGTCTTCATCTGAGGTTCACTTTTCTGGAGTTTACATGGATGGCATAGAGCAAAGAAACGCTGGCGCAGAGCAACCGACTACTTCTGCAACCGACATGAACAAACAACCTTTTGTGATAGGTGTTGCTGGTGGAGCAGCATCCGGTAAGACATCAGTTTGTGATTTGATTATTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCATTTTACCATAATTTGACTGAGGAGCAACTTATAAGAGTACAAGATTATAACTTTGACCATCCTGAAGCTTTTGATACTGAGCATTTGCTACGTGTCATGGACAAGTTGAAGTGTGGCCAAGCAGTAGATATTCCGAAGTATGATTTTAAGGGTTACAAAACTGGTGTTTTTCCAGCGAGACGGGTAAACCTGGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTCCATGATCCACGAGTGCGGGCATTGATGAATATGAAGATATTTGTCGATACAGATGCTGATATTCGCTTGGCGAGAAGAATTAAACGGGATACTGCTGACAATGCTCGTGATATTGGAGCTGTGCTCGATCAGTATTCTAAATTTGTGAAGCCGGCTTTTGATGACTTTATTCTTCCCACCAAGAAGTATGCCGATATCATTATACCCCGTGGAGGAGATAATCATGTAGCTATTGATTTGATTGTACAGCATATCCGCATGAAGCTTGGGCAGCATGACTTGTGTAAAATATACCCTAGCTTATATGTTATTCAGTCCACTTTTCAGATACGGGGTATGCATACCCTGATTCGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACGGAAAAGCAAGTAATCACTCCAACTGGATCTGTTTACAGTGGCGTGGATTTCTGTAAGAGGTTGTGTGGTGTCTCCATCATCCGGAGTGGCGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGCATCAAAATTGGGAAAATTCTTATTCACAGAGAGGGCGACAATGGTCAACAGCTAATATATGAGAAGTTGCCAAAGGATATCTCAGATAGACATGTATTGCTGTTGGATCCTATCTTAGGGACAGGTAATTCGGCTGTTCAAGCAATTTCTCTACTTTTAAAGAAGGGTGTACCAGAGTCCAACATTATATTTCTCAATCTGATATCAGCACCTCAAGGTGTTCATGTGGTCTGCAAAAGCTTCCCAAAAATAAAGATCGTGACATCTGATATTGAAATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGTGAATTTGGGGATCGATATTTTGGAACAGATGATGACCAGCAGGTGCTGCTCCCTTCACAGTAG 1434 0.4135 MGTKSVVDLMESSSEVHFSGVYMDGIEQRNAGAEQPTTSATDMNKQPFVIGVAGGAASGKTSVCDLIIQQLHDQRVVLVNQDSFYHNLTEEQLIRVQDYNFDHPEAFDTEHLLRVMDKLKCGQAVDIPKYDFKGYKTGVFPARRVNLADVIILEGILVFHDPRVRALMNMKIFVDTDADIRLARRIKRDTADNARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRMKLGQHDLCKIYPSLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISDRHVLLLDPILGTGNSAVQAISLLLKKGVPESNIIFLNLISAPQGVHVVCKSFPKIKIVTSDIEIGLNEDFRVIPGMGEFGDRYFGTDDDQQVLLPSQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0110 477 TIGRFAM udk: uridine kinase 45 247 IPR000764 -
Vra6g0110 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 240 IPR027417 -
Vra6g0110 477 Gene3D - 43 250 IPR027417 -
Vra6g0110 477 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Vra6g0110 477 CDD UMPK 49 245 IPR000764 -
Vra6g0110 477 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Vra6g0110 477 Pfam Uracil phosphoribosyltransferase 265 466 - -
Vra6g0110 477 PANTHER URIDINE KINASE 15 468 - -
Vra6g0110 477 PANTHER URIDINE KINASE 15 468 - -
Vra6g0110 477 PRINTS Uridine kinase signature 47 64 - -
Vra6g0110 477 PRINTS Uridine kinase signature 77 88 - -
Vra6g0110 477 PRINTS Uridine kinase signature 122 137 - -
Vra6g0110 477 PRINTS Uridine kinase signature 179 189 - -
Vra6g0110 477 PRINTS Uridine kinase signature 193 204 - -
Vra6g0110 477 PRINTS Uridine kinase signature 215 228 - -
Vra6g0110 477 CDD PRTases_typeI 324 442 IPR000836 -
Vra6g0110 477 Gene3D - 251 466 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0110 Vra-Chr6 771464 779127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0110 1 469 PRT Gene Family AT4G26510 83.652 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0110 K00876 - gmx:100798205 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0110 6 771464 779127 Vra6g0110 6 771464 779127 ECH
Vra10g0316 10 7845959 7853243 Vra6g0110 6 771464 779127 PCT