Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0108 ATGCTACCGTCTGTTGATGAACTTGGCACACCAAAACATCCAAGGAATCAACAATCTCTGCGATCAGAATCATCAAATTCTCTTGCCAGCACAAGAGCAATTCTTGGGCAACCTCGACTTCAAAGGACCAAACCTATCATATGGTGTGCTGCAATACTGTGCTTGATATTCAGCCTCGTACTCATCTTCTTTGGAATTGCAATACTGATCCTCTACCTAGCCATGAAGCCAAGAAATCCCACTTTTGACATTCCCAATGCAAGCCTCAATGTAGTGTACTTTGACTCACCACAGTACCTCAACGGTGAGTTTACTCTCCTTGCAAATTTCTCCAATCCTAACAGAAGAATCGGGGTGAGGTTTGAGTCCTTGAACATTGAGCTTTTCTACTCGGACAGACTGGTATCATCACAGAGAGTAAAGCCTTTCACTCAGAGGCCAAAGGAAAACAGGTTGCAATCAGTGAACTTGATATCCAGCTTAGTGTTTTTGCCTCAAGATGTTGGTGTAAAGCTTCAAAGGCAAGTGGAAAATAACAGGATCAATTACAATGCAAGAGGAACTTTTAAAGTGAGGTTCAATATTGGCCTTATCCATTTATCTTACTGGCTGCATACCATATGCCAGATAGAGATGACCAGTCCTCCAACTGGTATTCTACTGGCCAGACAATGCATAACAAACAGATCAAGATGA 696 0.4224 MLPSVDELGTPKHPRNQQSLRSESSNSLASTRAILGQPRLQRTKPIIWCAAILCLIFSLVLIFFGIAILILYLAMKPRNPTFDIPNASLNVVYFDSPQYLNGEFTLLANFSNPNRRIGVRFESLNIELFYSDRLVSSQRVKPFTQRPKENRLQSVNLISSLVFLPQDVGVKLQRQVENNRINYNARGTFKVRFNIGLIHLSYWLHTICQIEMTSPPTGILLARQCITNRSR* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0108 231 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 16 229 - -
Vra6g0108 231 MobiDBLite consensus disorder prediction 1 25 - -
Vra6g0108 231 MobiDBLite consensus disorder prediction 11 25 - -
Vra6g0108 231 Pfam Late embryogenesis abundant protein 111 201 IPR004864 -
Vra6g0108 231 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 16 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0108 Vra-Chr6 766101 767275 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0108 - - pvu:PHAVU_008G282100g 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0108 6 766101 767275 Vra6g0108 6 766101 767275 ECH
Vra10g0318 10 7867431 7868797 Vra6g0108 6 766101 767275 PCT