Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0106 ATGCCATTAATCCTAAATCTCGCACCACTCGCCGGACCTGCCACGACTCTCCGATCTCCGCCCATGGTCAGGGCATTCACGGCGACGATCGATTCCCGAAGGCCGGCGAGCCTCTATGAAGTTCTCCGGATCAAGCAGAACGCGTCGGCCGTGGAGATAAAATCAGCGTACCGGAACCTGGCGAAGGTGTACCACCCTGATTCCGCACTCCGGCAACCGGAGTCCGACGAACGGGACTTCATCGAGATTCACGACGCGTACCAGACGCTGTCGGATCCGTCGGCGAGAGCCGTGTACGATCTGTCGTTGATGGCGGCGCATGGCGGTAGTGGCTCCTTCACTTCTTTGGTGGCCCCCGATGGGTCTTCCAGGTTGTACTACCAGACCCGCAAGTGGGAAACGGATCAGTGCTGGTAG 417 0.5947 MPLILNLAPLAGPATTLRSPPMVRAFTATIDSRRPASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSALRQPESDERDFIEIHDAYQTLSDPSARAVYDLSLMAAHGGSGSFTSLVAPDGSSRLYYQTRKWETDQCW* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0106 138 PRINTS DnaJ domain signature 39 57 IPR001623 -
Vra6g0106 138 PRINTS DnaJ domain signature 57 72 IPR001623 -
Vra6g0106 138 PRINTS DnaJ domain signature 75 95 IPR001623 -
Vra6g0106 138 SUPERFAMILY Chaperone J-domain 37 114 IPR036869 -
Vra6g0106 138 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 26 138 - -
Vra6g0106 138 Gene3D DnaJ domain 26 114 IPR036869 -
Vra6g0106 138 Pfam DnaJ domain 38 100 IPR001623 -
Vra6g0106 138 CDD DnaJ 39 92 IPR001623 -
Vra6g0106 138 ProSitePatterns Nt-dnaJ domain signature. 80 99 IPR018253 -
Vra6g0106 138 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 26 138 - -
Vra6g0106 138 SMART dnaj_3 36 95 IPR001623 -
Vra6g0106 138 ProSiteProfiles dnaJ domain profile. 37 103 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0106 Vra-Chr6 758584 759273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0106 39 100 C2H2 Transcription Factor Family AT1G74250 43.939 8.22e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0106 - - gmx:100786034 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0106 6 758584 759273 Vra6g0106 6 758584 759273 ECH
Vra10g0326 10 7965151 7965914 Vra6g0106 6 758584 759273 PCT