Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0100 ATGCAATCAAAATCTGAAACTACTAATCAGCCAAGGTCTAGTCCACATTCCTTTACGCCTAACACTGTTTATTCTGAACCCTGGTGGCGAGGTATTCATTACAATTCTGCTCCGAAAGCAATGTCAGGGGTGAATGCATCAAATTCATCATCACTTGAACGCCCTAATGCCGATTCTGAATCCAGTGAAGGTCAATCTTTGTCCAACAATGGGATGAATGAGGAAGATGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAAGACCACCAAGCCATGCTGCATTCTTCATCATCTGCACCTTCTAGGCGTGATGACTGCCTTCCACATGCTCCACAACTGGAACTTATTAGCCATTCATTTGGATATGCTCCTTATATAGGAATGCCTCATGCCAGAATGGCTTTGCCTCTCGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGACGAAGACAGGCTAGGGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGTCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAAGCTTCAAAACACACGAACAAGGAAAAGGATACGGGTGCAGCTGGTCCAGTTTCGTCGCCACAGTCAGTTAGTTCATCTGGGTTGGGACCGGTACCCTCTGAAGTGCATGAGAGACTTGAAAAACACAACTATGCAAATGTTTTGCAGTCATCATCTGCGTTCTGTTTGCACTCCGGTGAGAGAGTAGAGGAAGGAGACTGTTCAGGTCAACAACGAGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAA 906 0.4503 MQSKSETTNQPRSSPHSFTPNTVYSEPWWRGIHYNSAPKAMSGVNASNSSSLERPNADSESSEGQSLSNNGMNEEDDDATKESQPTAPNQSGNYGQDHQAMLHSSSSAPSRRDDCLPHAPQLELISHSFGYAPYIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASKHTNKEKDTGAAGPVSSPQSVSSSGLGPVPSEVHERLEKHNYANVLQSSSAFCLHSGERVEEGDCSGQQRGSISSEQSSQRRLAIQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0100 301 MobiDBLite consensus disorder prediction 282 301 - -
Vra6g0100 301 Gene3D - 149 211 - -
Vra6g0100 301 MobiDBLite consensus disorder prediction 1 25 - -
Vra6g0100 301 MobiDBLite consensus disorder prediction 273 301 - -
Vra6g0100 301 MobiDBLite consensus disorder prediction 38 114 - -
Vra6g0100 301 MobiDBLite consensus disorder prediction 40 73 - -
Vra6g0100 301 MobiDBLite consensus disorder prediction 188 203 - -
Vra6g0100 301 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 291 - -
Vra6g0100 301 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
Vra6g0100 301 MobiDBLite consensus disorder prediction 83 111 - -
Vra6g0100 301 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Vra6g0100 301 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
Vra6g0100 301 MobiDBLite consensus disorder prediction 1 24 - -
Vra6g0100 301 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Vra6g0100 301 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 291 IPR001289 GO:0003700|GO:0006355
Vra6g0100 301 MobiDBLite consensus disorder prediction 204 223 - -
Vra6g0100 301 MobiDBLite consensus disorder prediction 188 256 - -
Vra6g0100 301 MobiDBLite consensus disorder prediction 228 242 - -
Vra6g0100 301 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Vra6g0100 301 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0100 Vra-Chr6 718255 721704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0100 76 301 CCAAT-HAP2 Transcription Factor Family AT3G20910 49.383 8.76e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra6g0100 CBFB_NFYA 9.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0100 K08064 - gmx:102664020 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0344 10 8223663 8228078 Vra6g0100 6 718255 721704 PCT