Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0088 ATGGAAGCGAACAAAGAGGAAGCACTTAAAGCGGTAGAGATTGCTGAAAAGCGATTTGCTGTGAGGGACTTTGCAGGTGCAAAAAACTATGCTGTAAAGGCTAGAACACTTTGTCCAGGATTGGATGGTATATCTCAAATGGTGGCCACATTTGAAGTTTACATCGCTTCTGAGGTCAAACATAATGGTGAGCTAGATTACTATTCGATTCTTGGATTAAAACCTTTTGCAGATAAGGAGGCTGTGAAGAAACAATACAAGAAGTTGGCAGTGTTGCTTCACCCCGATAAGAACAAGTGTGTGGGGGCTGACGAGGCATTTAAGCTTGTTTCTGAGGCTTGGACTTGGCTATCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGTGCAGTTGGGTGGGACTAACCAGATGAATCTGTCTCCTGCTCATGCCACAGGGGCTGCAGGTTATAACAAATGTTCCAATTTGTCAACCCCTCGTGGTGGGCTTGACACCTTTTGGACAATCTGCACCTCTTGTAAGGTTCAGTACGAGTATCTACGCAAGTACGTGAATAAAAGACTGTCTTGTAAGAACTGCCGTGGCACTTTTGTGGCTGTCGAAACTGGGGCGGCCCCGGCAAATGGTTCCTTTCCATATTGTCCTTGGTCATATGTGCCAGGAAATGGGTATGCAGGTCATTCATTTGATGGTGTCTCATATGTTCCAACCAGTGCCCCCTATTTCAACGGGAATGGGGTTGCAGGATATCATTCTGGACATGGATATGAGTACGTTCCAAATGTTTCATTTCAGTGGGGCTCTGCTGGAGTTGTTAATCAAAACGGATCAACTACCTTACCTGTTGATTCTGTCAATCGGGCAAATGGAAATGTGAAGAGGGGAAGACCAAAACTCAAAACAGGAGCTGATAAGAGGCATCATGTAGCAGAGATCATGGTGAATACAAATTCAGATGTACCATTCTCCTATAGTGAACCACAGGATGATAAACTAAGTAGACCTGACAAGAAACAGAAAGTTGTTGTGGGAGGCACTTTCAGAAATGGCTACGAAGAAAAGGGTTCAAAATGTGCTCTAGAGGCAATAGTGTCTAACGGAAATGATAGCACTGGACACGGCCAAAAACCTTCCTGTGCAGTTGAAGTTCAAACCAAACATTGTTCCATGGCACCGGCATTTGATGCAAGAAAATTATTGATTGAGAAAGCCAGGACTGTAATCAGGAAGAAACTGGAGGAGATGAAGCTGTCATCCGAAGTAGAAGCTGCAGCTCTGAAAGAGAGAGAAAAATCTCTAGCTCAAGTTGGTCCAGTAAAAAGAGAGACATTTAGAAAAACAGCCCTGAATGTTTCTGGTCTACAGCTAGAGAATGGGAAAGCTGGTCCAATCTCAATTACTGTCCCGGATTCTGACTTTCACGACTTTGATAAAGATAGGTCAGAGGAATGCTTCAGGCCAAAGCAAATATGGGCCCTGTACGATGAAGAAGATGGAATGCCACGGTTGTATTGTATGATCCGTGAGGTCGTGACTGTCAATCCATTCAAGATTCACATCAGTTACCTGAGTTCCAAAACTGATAGTGAGTTTGGCCCAGTAAACTGGCTGGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCCTTTAATTCAGATGTTGTTGATCAGGTTAACATATTTTCTCATGTTCTAAGTCAGGAGAAGGCTGGCCGAGGGGGTTGTGTCCGCATATATCCCAGAAGTGGAGATATTTGGGCTGTGTATCGAAATTGGTCATCAGACTGGAACAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTTGAAGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTTAGTCCCCTTGTTAAGTTGGCTGGATATAAAACAGTATATCAGAGTAACACCGACAAGAGTGCCATAAAATGGATACCCAAAAGAGAGATGTTGCGGTTTTCTCATCAAGTGCCTTCTTGGTTGCTGAAGGGGGAAGCCGAGAATTTGCCAGAAAGGTGTTGGGACCTGGATCCGGCTGCAACTCCAGATGAGCTTCTTCATGCTGCTGCTACAGAAGAACCAAACGCTTTGTAG 2121 0.4408 MEANKEEALKAVEIAEKRFAVRDFAGAKNYAVKARTLCPGLDGISQMVATFEVYIASEVKHNGELDYYSILGLKPFADKEAVKKQYKKLAVLLHPDKNKCVGADEAFKLVSEAWTWLSDSAMRSSYDLKRNVQLGGTNQMNLSPAHATGAAGYNKCSNLSTPRGGLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVPGNGYAGHSFDGVSYVPTSAPYFNGNGVAGYHSGHGYEYVPNVSFQWGSAGVVNQNGSTTLPVDSVNRANGNVKRGRPKLKTGADKRHHVAEIMVNTNSDVPFSYSEPQDDKLSRPDKKQKVVVGGTFRNGYEEKGSKCALEAIVSNGNDSTGHGQKPSCAVEVQTKHCSMAPAFDARKLLIEKARTVIRKKLEEMKLSSEVEAAALKEREKSLAQVGPVKRETFRKTALNVSGLQLENGKAGPISITVPDSDFHDFDKDRSEECFRPKQIWALYDEEDGMPRLYCMIREVVTVNPFKIHISYLSSKTDSEFGPVNWLDSGFTKSCGNFRAFNSDVVDQVNIFSHVLSQEKAGRGGCVRIYPRSGDIWAVYRNWSSDWNRSTPDEVRHQYEMVEVLDDYSEELGVCVSPLVKLAGYKTVYQSNTDKSAIKWIPKREMLRFSHQVPSWLLKGEAENLPERCWDLDPAATPDELLHAAATEEPNAL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0088 706 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vra6g0088 706 PANTHER BNAC03G44070D PROTEIN 1 698 - -
Vra6g0088 706 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vra6g0088 706 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vra6g0088 706 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vra6g0088 706 Pfam Domain of unknown function (DUF3444) 468 674 IPR024593 -
Vra6g0088 706 Gene3D DnaJ domain 55 148 IPR036869 -
Vra6g0088 706 PANTHER BNAC03G44070D PROTEIN 1 698 - -
Vra6g0088 706 CDD DnaJ 66 119 IPR001623 -
Vra6g0088 706 Coils Coil 412 432 - -
Vra6g0088 706 SMART dnaj_3 65 122 IPR001623 -
Vra6g0088 706 Pfam DnaJ domain 66 127 IPR001623 -
Vra6g0088 706 SUPERFAMILY Chaperone J-domain 59 131 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0088 Vra-Chr6 588903 592323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0088 4 301 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.218 2.33e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0088 - - vun:114194067 1392.1