Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0083 ATGTCCAAAGAAAGTATGTCCTCAGCTGGTGGTGATGGTGGTGCCAGCATTGAACTTGGCGCTGCCTTACTTGGTTCTACTACCCTCACCAAGGGGAAGTACAACAGGATATGGCGTAGGAGTTTATACATAAGGTTCCTCATCTCCACGAAGAAACCATCAACTTCCAGTTGTAACCATGACTCTCCACCATCACCATCTCCTGCTAGAACCTTCTCTTCCAAATCCTATGTCACACTTGATATAGAAGAGAGCATTAGCAGTGATACTGATGGAATTGTGAAGGACCAGGGCTTGATTTCTCTTCCTGGGCTTGGTGGTCAAGGTCAACACACACAGGGGCACGGTGCTGTTGATGAGGGGAACCCCACTGTACCGTTACCAGTTTTTGGAATAGACTTTTCTAAGTCTTTATTGAATAGCTATAAATGCTACCGTTGCACAATCTTGATGCTGTTGGTCTCAGCTGGGTTGTCATTCACCATAGACTTCAAGCAGGAGGGACCTAAACATGGTTGGCATGATGGTGTTGCTATATTATTTGCTCTTGTCCTGCTGGTTCTGGGAAAACCAGTTGCAAACTTTTTCTGTGAGAGGAAAAAGTTGAAATTGAAGGAGAGAAAGCAGGAGTTGGAATTCAGAGTGAAACGAGGTGAAGAGTCCCTAGTGGTTCCCGTATCTGATATTGTGGTGGGAGACACAGTGTGCCTGTGGCCAGGCGATGAGGTTCCAGCAGATGGTGAGCTCGAAAGTGATGGCATCCTTGTTCTGGTTGAGCTTGAGGAAATAAAAAGCAAACAGAAGGGGCAGAATTCGTTTCTTACATCTGGTTCAAAGGTGATCGGGGGCCAGGGAAGGATGTTGGTAACATCAGTTGGAACCAAAACCAGTTTGGCTAAGATAGGTACCTGTAATTCTGAAAGGAGGGGTTTGTTGGAAAGACAAATTGAGAAGCCAATTTCTTACATTGACATGGCTGCACTTTCTATCTATGTACTGGTTGCATTTGTGGTGTTGATTCGCCTAATTTGTGGAAAAGACGGGAGCAATGCAGGCTTGCCAGAAATGAAAGGGAAGGTCTCAATTGGCCTGTTTATGCATGTCCTTGAGAGAACTTTTCTAAGACCCCAAGGAAGGGTTTCCATTTTAACAGGTCTTGCTACTGTTGCAATACTTTGCGTTCAGCATGGAATGCCATTTGTGGTTACCATTTCTCTTAAGTACCAGATTGAAAAGGAAGTACGAAACCAAGATGTAGTTCTTAATGATTTGTCCGCTTGTACGACAATGGGGTTGGTAACTGTGATCTGTATTGATGTATCAGGGGAACTCATATCTAAACCAATGGAAGTTAGAAGAATATGGATGGGAGAGAAAGATATCGGCATGGTCGAGGGATCTGAAACAGAAAAACCCGTGCTTGACATGCTTAAACTAGGGGTTGGTTTATCAGTCCTTGCACCAGAGATTTATCTTTCCCCTGTGTTCAATTCACTTGTTTGTTGGGCAGAAACAACATGGGAAATGAGCATGAGATCTTTCACAGAAGAAAAATTTGACATTCTTAAGCACATCAAATTGAATTCTGGCAAAGAAGTCAGTGGGGTTTTGGTGAGAAAAATTGGGGACAGTGAAGTTCTGCACTTGCACTGGAGTGGAGCTGCATCCACAATATTGGAGATGTGTTCGAGATACCATGACAGTAAAGGGAATTGCCACGCCATGGAAAATCAAAAAATCAAATTTGGGCAGGTGATTAAAGAGATGGAGGATAGTGGTCTTAGATCAATTGCTTTTGCTTATAAACAAACAGATGGAGAAGAACTTGAGCAAGAAGAACTGATCTTGTCTGGACTGATAGGCCTGAAAGAAACTAGTCAAGAATCCATAAAATTAGCTTTGGAAAATTTCAGAAATGCTGCAAATGTACAGATCAAACTGGTCTCAGAGGATGGCATCGAGAAATTGGAAGGCATTGCTCGTGAACTAGGACTAGAACATGATGTTGTGCTAGAAGGTAAACAACTTCAAGATTTGAATGGGGAAGCTAGATTGGTCGAAGTGGATCGAGCCCATGTAATGGCAAGATTCCTTCCTGAAGACAAACTTCTCATGATACAGTGCTTGCAAGAGAAAGGCAAGGTGGTTGCATTCATTGGGACAAGGTTGAGAACTAGTCTTACTTCAGTTCTAAAAGTAGCTGACGTGGGGATAGTGCTTGATTCTTTAAGCACAAGAGTGGATAGAGATAATTGTGACATATCTATCAAATGCTTCAGTGCATTGAAACCCGTTGTGATAGCTGGCAGAAGTAAATACCACAATATTCAGAAGTTCATTCAACTCCAGCTGACATGTACCATTTCAGGATTAGTCATAACCTTAATCACAGCCTGTACTGGAGATTCCCCGCTTGCACCGTTCCAGTTGATTTGGGTGAATGTTGTTGTGTGCATTCTAGGTGGCCTAATGATGGTAATGAAGTTAACCAACGAGGAACAACTTGCTAAACAACCATCTGATAACAGGAACCAAAATATTATAGCCAAAGAAATTTGGAAAAGCATTGCTATTCAGATAGTCAATCTGCTCAACACCATGAAGTTGTTGAGAAAGGAAGTTCTTGTTCAGAGCTTCTATTTCTTGGGGGCCTTAGTTATCTGTTTTCTCATGCAAGTGGTGGTGATTGAGTATGCTAAAGGCCTGTCAGATTGCATGCACCTGAATGTTACGAGATGGGGTATCTGTGTCATGATTGGTGCTCTTGCATGGGTTTTTGAGTGGAGCACGAAGAATATTCTTCCAGTTATTCTGAATCCCAGCACCAATTATTCTTCAGAATTCAATACTTCACCTTCTTTCTTTCTTTCTCCATCTTTTCCATTTCTGATGCTACTTTTGTTCCCCATAGGACTGATTTTTAGTCAAATGGGAATGAACATGACACTTCGTTAG 2955 0.4234 MSKESMSSAGGDGGASIELGAALLGSTTLTKGKYNRIWRRSLYIRFLISTKKPSTSSCNHDSPPSPSPARTFSSKSYVTLDIEESISSDTDGIVKDQGLISLPGLGGQGQHTQGHGAVDEGNPTVPLPVFGIDFSKSLLNSYKCYRCTILMLLVSAGLSFTIDFKQEGPKHGWHDGVAILFALVLLVLGKPVANFFCERKKLKLKERKQELEFRVKRGEESLVVPVSDIVVGDTVCLWPGDEVPADGELESDGILVLVELEEIKSKQKGQNSFLTSGSKVIGGQGRMLVTSVGTKTSLAKIGTCNSERRGLLERQIEKPISYIDMAALSIYVLVAFVVLIRLICGKDGSNAGLPEMKGKVSIGLFMHVLERTFLRPQGRVSILTGLATVAILCVQHGMPFVVTISLKYQIEKEVRNQDVVLNDLSACTTMGLVTVICIDVSGELISKPMEVRRIWMGEKDIGMVEGSETEKPVLDMLKLGVGLSVLAPEIYLSPVFNSLVCWAETTWEMSMRSFTEEKFDILKHIKLNSGKEVSGVLVRKIGDSEVLHLHWSGAASTILEMCSRYHDSKGNCHAMENQKIKFGQVIKEMEDSGLRSIAFAYKQTDGEELEQEELILSGLIGLKETSQESIKLALENFRNAANVQIKLVSEDGIEKLEGIARELGLEHDVVLEGKQLQDLNGEARLVEVDRAHVMARFLPEDKLLMIQCLQEKGKVVAFIGTRLRTSLTSVLKVADVGIVLDSLSTRVDRDNCDISIKCFSALKPVVIAGRSKYHNIQKFIQLQLTCTISGLVITLITACTGDSPLAPFQLIWVNVVVCILGGLMMVMKLTNEEQLAKQPSDNRNQNIIAKEIWKSIAIQIVNLLNTMKLLRKEVLVQSFYFLGALVICFLMQVVVIEYAKGLSDCMHLNVTRWGICVMIGALAWVFEWSTKNILPVILNPSTNYSSEFNTSPSFFLSPSFPFLMLLLFPIGLIFSQMGMNMTLR* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0083 984 Gene3D - 198 306 - -
Vra6g0083 984 Gene3D - 434 446 IPR023214 -
Vra6g0083 984 Gene3D - 447 461 IPR023299 GO:0000166
Vra6g0083 984 Gene3D - 619 758 IPR023214 -
Vra6g0083 984 Pfam E1-E2 ATPase 213 341 - -
Vra6g0083 984 Gene3D - 149 433 - -
Vra6g0083 984 PANTHER CATION-TRANSPORTING ATPASE PLANT 859 948 - -
Vra6g0083 984 PANTHER CATION-TRANSPORTING ATPASE PLANT 66 860 - -
Vra6g0083 984 Gene3D - 759 864 - -
Vra6g0083 984 Gene3D - 502 618 IPR023299 GO:0000166
Vra6g0083 984 SUPERFAMILY Calcium ATPase, transduction domain A 212 301 IPR008250 -
Vra6g0083 984 Pfam Cation transporting ATPase, C-terminus 803 859 IPR006068 -
Vra6g0083 984 SUPERFAMILY HAD-like 435 821 IPR036412 -
Vra6g0083 984 MobiDBLite consensus disorder prediction 52 72 - -
Vra6g0083 984 PANTHER CATION TRANSPORTING ATPASE 859 948 - -
Vra6g0083 984 PANTHER CATION TRANSPORTING ATPASE 66 860 - -
Vra6g0083 984 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 934 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0083 Vra-Chr6 532748 536550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0083 142 963 Primary Pumps ATPases AT3G63380 31.473 9.53e-110 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0083 K01537 - gmx:102661547 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0083 6 532748 536550 Vra6g0083 6 532748 536550 ECH