Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0082 ATGGCCACCACTGCTTTCCAGCAATCAGCATTCGCTGGTCAAACAGCTCTGAAGCAGGTCAATGAGTTTGTCGGCAAAACCGGTGGCTCCGGCAAAGGTCGCACCAACATGCGCCGTACCGTCATGGTTGTTCCTCAGAGCATTTGGTCCTCTCTACATTCCTCGCGAACCTTCCCTCGGAATCGAAGCCTCGTTGTCAAAGCCTCTTCTTCTTCTTCTTCTTCCGACGACATTTCCCGGAGTAGGAGACGCTTCCTCGCCGAAACCGCCGCAATATCGGTTTCGCTTCCTCACTTTCCGGCGAGGGCCGAAGACACGCTGTCGGAGTGGGAGAGAGTGTACCTCCCTATCGACCCTGGCGTCGTGCTTCTCGACATTGCTTTTGTCCCCGACGACCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACAATTCTGGAGACGAAGGACGGAGGAAACACTTGGGCTGCGCGTTCGATTCCCTCTGCCGAAGATGAAGATTTCAACTATCGCTTTAATTCTATCAGTTTCAAGGGGAAGGAAGGGTGGATAGTTGGAAAACCTGCGATTCTGTTGTACACTGCTGATGCTGGAGAAAGCTGGGAGAGGATACCTCTCAGTGCTGAACTTCCAGGGGATATGGTATACATAAAAGCGACTGGTGAGAAGAGTGCAGAGATGGTGACTGATGAAGGTGCAATATACGTTACTGCAAACAGGGGTTACAACTGGAGAGCTGCTGTTCAGGAAACCGTGTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACCGGGACTTTCAATACTGTCAATCGCTCTCCGGATGGAAGGTATGTTGCAGTCTCAAGTCGAGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCATTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATACAGAACATGGGATGGAGAGCTGACGGTGGTCTGTGGCTTCTTGTTCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACTGGGTTAACTGAAGAATTTGAGGAGGTTCCTGTCCAAAGCAGGGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGCGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATCGATGACAAGAAGGGATTTGTATTGGGGAATGATGGAGTTTTGCTTCGCTTCCTTGGGTAG 1287 0.5012 MATTAFQQSAFAGQTALKQVNEFVGKTGGSGKGRTNMRRTVMVVPQSIWSSLHSSRTFPRNRSLVVKASSSSSSSDDISRSRRRFLAETAAISVSLPHFPARAEDTLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAARSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADAGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRFLG* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0082 428 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 109 427 - -
Vra6g0082 428 Gene3D - 171 392 IPR015943 GO:0005515
Vra6g0082 428 Pfam Photosynthesis system II assembly factor YCF48 106 426 IPR028203 -
Vra6g0082 428 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 73 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0082 Vra-Chr6 527760 531721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0082 1 49 Chloroplast and Mitochondria Gene Families AT2G05100 67.347 1.26e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0082 - - vra:106763078 846.654