Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0081 ATGGCCACCACTGCTTTCCAGCAATCAGCATTCGCTGGTCAAACAGCTCTGAAGCAGGTCAATGAGTTCGTCCGCAAGACCGGTGGCTCCGGCAAAGGTCGCACCAACATGCGCCGCACCGTCAAAAGTGCTCCTCAGAGCATTTGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCATTTTCTGACCAGATTCCATCATACCTGACCGGTGAATTCCCTGGTGACTACGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACCTTTGCCAGGAACCGTGAGTTGGAGGTGATTCACAGCAGATGGGCCATGCTTGGTGCTCTAGGAATCGTCTTCCCAGAGATTCTTGAGAAGAATGGTGTGAAATTCGGTGAGGCAGTGTGGTTCAAGGCTGGTGCACAGATCTTCTCTGAGGGAGGACTTGACTATTTGGGGAACCCAAACCTGATCCATGCTCAGAGCATTCTTGCCATCTGGGCTGTGCAGGTTGTGCTTATGGGGTTTGTTGAAGGTTACAGAGTTGGTGGAGGACCTCTTGGGGAAGGGTTAGACCCTATCTACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTTGCTGAGTTGAAGGTCAAGGAACTCAAGAATGGTCGCTTGGCTATGTTCTCCGTGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGCAAAGGCCCTATTCAGAACCTTTACGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCTGGACAATGA 798 0.5163 MATTAFQQSAFAGQTALKQVNEFVRKTGGSGKGRTNMRRTVKSAPQSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAYATNFVPGQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0081 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Vra6g0081 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Vra6g0081 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Vra6g0081 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Vra6g0081 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0081 Vra-Chr6 523409 524833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0081 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 85.283 5.68e-174 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0081 K08913 - gmx:100815789 532.717