Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0076 ATGCACCCTCCACGACAGCAGTCACAAGGTGGTGAAGGACTACGAACTTCTCTGTCTCTAGTTTCTTCAGATCCCCGCCTTTCCCTTGAGGAGCCTAGATCAAACACTGGCAATCTCCGTGAATCTCCGACTGGAAGTGCCAGTTCTCGGGAAATTTGGCCCGCTGCTGCAGCAATAAAAAGGGAGAGTGACTGCCCTGATCAGGCTGTTATACGTCGTGTTTCTGGTTCTGACAAAATTACTCTTCATGACGTTGCAAGAGAACGAGTTGATATAATATGTGAAAAAATGGTTCATCTACCTTCCGAATTTCTTGACGAACTGAAAAATGAACTTCGAGTTATCCTTGAAGGAGGGAATGGCTCGCAGCATAGAGAGGAATTTTTTATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAACCAACACATTGGCACGAACACATCGTGTGCAGCTCGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAATCTATCTCAGGCTTCATTGATTGAGATATTTCTGTATAAGAGATGCAGAAACCTAGCTTGTGGGAGCCAGCTTCCTGCTGAAGATTGTACCTGTGAGACATGCACCAATGGAAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGTAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTGTGTTCACATTGGACTCACACTGATTGTGCCATTCGCGAGCAACTTATTTGTATGGGCCCTGCTACACAGAATGGAACAGGGCCAAGCGAAATGGTATTTAAGTGTCAAGCATGCAATAGGACTTCAGAACTGCTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCGATGTCATGGGATGGAGAGGCCCTGATTAGGGAACTTGATTTTGTCAGTAGGATCTTTCATGGAAGTAAAGACCCACGAGGGAGGAAACTTCACTGGAAGTCTGACGATCTCAAGGAAAATTTAAGAAGTGGCAAAGTCGAAACTACGGCTGCATGCACGGGAATATTGATGTTTTTCAAAGAGCTTGAGCTGGACTCTCAAAAGACCCTGGAAAATGTTGAAAGTGGAAGTGGAAGACTGATTGTTCCACAGGAGGCATGCAATAGAATTTCAGAGGTGGTGCATGAGGCTGTAAGAAATATGGAAATGGTAGCCAATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGTCTTTTGATGCTTGTGAACGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTAAAAATGGATAGGCAAAAAAAGAAGTTAGAGATTGAAGAACTAGAGAAAATTGTGAGGCTTAAAAGTGCAGAGGCTGATATGTTCCAGATGAAGGCTAGTGAAGCTAAAAGAGAAGCTGAGCGGCTCCAGAGAATTCTTCTTGCCAAGTCTGATAAATCAGAAGAAGAATATACCAGCAATTATTTGAAGCAAAGATTAAGTGAGGCCGAGGCTGAGAAGCAGTATCTGTATGAGAAGATCAAAATGCAGGAGTCTTCTCGTATATTGCAAAGCAGTAGTGGTGGTGACCCCTTGATGTTTTCCAAAATTCATGATCTCCTCTATAGTGTTCCTCCCAGTGCAGATGGTCCATCTAATGACTGCCATCCTTTTCGAACAAACCCATAA 1680 0.4315 MHPPRQQSQGGEGLRTSLSLVSSDPRLSLEEPRSNTGNLRESPTGSASSREIWPAAAAIKRESDCPDQAVIRRVSGSDKITLHDVARERVDIICEKMVHLPSEFLDELKNELRVILEGGNGSQHREEFFILQKLVQSRSDLTTNTLARTHRVQLEILVAINTGIQGFLHPSINLSQASLIEIFLYKRCRNLACGSQLPAEDCTCETCTNGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPATQNGTGPSEMVFKCQACNRTSELLGWVKDVFQHCAMSWDGEALIRELDFVSRIFHGSKDPRGRKLHWKSDDLKENLRSGKVETTAACTGILMFFKELELDSQKTLENVESGSGRLIVPQEACNRISEVVHEAVRNMEMVANEKMRMFKKARLSFDACERELADKAREAGELKMDRQKKKLEIEELEKIVRLKSAEADMFQMKASEAKREAERLQRILLAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKMQESSRILQSSSGGDPLMFSKIHDLLYSVPPSADGPSNDCHPFRTNP* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0076 559 PANTHER PROTEIN OBERON 2 1 544 - -
Vra6g0076 559 Coils Coil 428 483 - -
Vra6g0076 559 MobiDBLite consensus disorder prediction 1 51 - -
Vra6g0076 559 CDD PHD_OBE1_like 218 277 - -
Vra6g0076 559 MobiDBLite consensus disorder prediction 1 49 - -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 96 118 IPR004082 -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 138 153 IPR004082 -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 153 168 IPR004082 -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 179 200 IPR004082 -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 225 245 IPR004082 -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 298 317 IPR004082 -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 443 463 IPR004082 -
Vra6g0076 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 482 504 IPR004082 -
Vra6g0076 559 Pfam PHD - plant homeodomain finger protein 188 311 IPR032881 -
Vra6g0076 559 Pfam Coiled-coil region of Oberon 408 538 IPR032535 -
Vra6g0076 559 SMART PHD_3 218 278 IPR001965 -
Vra6g0076 559 PIRSF UCP025218 1 545 IPR004082 -
Vra6g0076 559 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 544 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0076 Vra-Chr6 501963 504906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0076 188 290 PHD Gene Family AT5G57380 31.731 4.37e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0076 - - gmx:100803870 949.503