Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0071 ATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACTATCAACCATTACAACAAATTGAAGCCTACTGCTTGCCGCAGTATGGGAACCTTAATCAACAGCTATATTACCATGGTGGAAGCCATGGAACTCACTTTTCAACTCCAAGTTCTTCTGAACTTTACTGTACATTGGAATCATCATCTGTAGCTGGCAGTTTCACCCTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGCCCCATATCACAGCATGACTCTCAGTCATATCCACCTGACCAGTATCATTCCCCTGAGAATGCCTACGGCTCTCCATTGAGTGGCTCCTGCATAACCGATGATTTAAGCAGCTTCAAGCACAAACTGAGAGAGTTGGAAAGTGTAATGCTTGGCCCTGACTCTGATAATCTTGATAGTTATGACAGTGCCATAAGCAATGGAAACAACTTTGCTTCACCTGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTAGCAAAAACCTGAAGCACATCCTTGTTGCATGTGCCAAAGCCATTGCGGACAATGATTTGCTTATGGCACAGTGGCTGATGGATGAACTAAGGCAGATGGTGTCAGTTTCTGGCGATCCAATTCAACGGTTGGGAGCATACATGCTGGAAGGACTTGTTGCACGATTGGCTGCTTCTGGGAGTTCGATATACAAAGCTTTAAGATGCAAAGAACCAGAGAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTTTGCCCCTACTTCAAATTCGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCTATGAAAGATGAAGAAAGGGTGCACATAATTGATTTCCAAATCGGTCAAGGAAGCCAGTGGATAACTTTAATTCAGGCTTTTGCAGCTAGACCTGGAGGGCCACCCCACATTCGGATTACAGGTATTGATGACTCACAATCAGCTTATGCCCGTGGTGGTGGACTGCACATAGTGGGAAGGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCGTTTGAATTTCACGCTGCAGCTATCTCTGGTTGTGATGTTCAAGTACACAACCTTGGAGTTCGACCGGGGGAAGCTCTGGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTGAGTACACAGAATCACAGGGATAGGTTGTTGAGGTTGGTTAGGAGCCTATCGCCGAAGGTGGTGACACTTGTTGAGCAGGAATCCAACACAAACACTGCTGCATTCTTTCCTCGTTTCCTTGAAACTCTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTTACTCTTCCTAGAGTTCATAAAGAGAGAATCAATGTCGAGCAGCATTGTTTGGCAAGAGATTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGGGTGGAACGGCATGAAGTACTTGGGAAGTGGAGATCAAGATTTGCAATGGCCGGTTTCACTCCTTACCCTTTGAGTTCACTGGTGAATGGTACCATTAAGAAATTGCTTGAGAACTACAGTAATAGATATAGACTTGAAGAGAGAGATGGAGCTCTTTATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGCGCATGGAAATGA 1632 0.4442 MQASEQHRSSSMYYQPLQQIEAYCLPQYGNLNQQLYYHGGSHGTHFSTPSSSELYCTLESSSVAGSFTLYNSPSTVSFSPNGSPISQHDSQSYPPDQYHSPENAYGSPLSGSCITDDLSSFKHKLRELESVMLGPDSDNLDSYDSAISNGNNFASPEMDSWRQTMVAISSKNLKHILVACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEERVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAYARGGGLHIVGRRLSKLAEHFKVPFEFHAAAISGCDVQVHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRVHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSNRYRLEERDGALYLGWMNRDLVASCAWK* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0071 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 543 IPR005202 -
Vra6g0071 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
Vra6g0071 543 Pfam GRAS domain family 173 543 IPR005202 -
Vra6g0071 543 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 15 543 - -
Vra6g0071 543 MobiDBLite consensus disorder prediction 78 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0071 Vra-Chr6 455712 459028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0071 12 543 GRAS Transcription Factor Family AT5G48150 66.729 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra6g0071 GRAS 1.4e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0071 - - gmx:100808300 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0071 6 455712 459028 Vra6g0071 6 455712 459028 ECH