Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0070 ATGGTTTCTTCAGAAAAAAGTGAAGATCAAAATACCCCTTATGATAAATTGCAGCATAGAGCGAGTCCTGATAGTGATGTTACATTGTCTCAAGGTCATGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCCACAAGTATTCCTTCTGCTGTAGCTAAAAATGAAGAAGGGAAGGACTCCGATGCTACTGCTTGTGCCCTGGAATCAGATCAAGAAGGAAGCACATGCTCATTACCACCTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCAATAATACGTGAAAAGGTATCTAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTCAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCTAATAATGGGAACATCACAGATTGTGTTTCTATCGGACAGCATAATCATCCTAGGCCCCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTGCCGGTTGTTGAACAAGCAGCACGCAAACCCTTGTTAGCCAATGTGAAAGACAAAACATCCGTTGAGCAAGGATGCACGTCTCTACAGATCAAGCCTTTACAGTCCTTTCCGACTGCAAAAGTGTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTGTCTAAGGCAAAGAATCAGATTCATGACAACGAGGATCCTGAGTCAAAGCGACTGAAGAAAGACAATAGTAATGTTGATGCCACTGGAATTACCATGTCAACTCGTGAACCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGAAGTTACTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAACTCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAACGACCATGAATGGCAAGGCAGGAACCAAATCTGAAGATACTGCTGTTAATAGAGGGGAACAAACTGGCTTGGGCTCAGCAAGCAAATTAACAGAGCAACTAAATGGAAAGTCAACTACTAAGTCAAAGGTCGGTGATATTGTGGAGTTTGGCGTGAGCAGTCTTTCTAATGAGGGTCCTAAAATTAAATTAAGTGAGCAACATCAAAAAGATAACTCAGGTACTAAAGACGATTCTGTCAGCAATGATGTTATATGCCATTCTAGTTCTGGAGTTCCGTGTAGATCCAATGAACAGCTGAAAGGTGAGGTAAAACCTTTATCAGAAGGAACTAAGGATTGCCTTAACAAGGTTGCCATTCAAGATACCCCCAGTACAGAAAGCGAATTTAATAAGCAACCAGCAGCTGATGCAGAACCGGTCCAAAGCTAA 1521 0.4181 MVSSEKSEDQNTPYDKLQHRASPDSDVTLSQGHDTKNDLSKPEGATSIPSAVAKNEEGKDSDATACALESDQEGSTCSLPPEKHLQSPDTLLNELPPLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSNNGNITDCVSIGQHNHPRPQLNSTVSVECVLPVVEQAARKPLLANVKDKTSVEQGCTSLQIKPLQSFPTAKVSPVNELKAAHLQLSKAKNQIHDNEDPESKRLKKDNSNVDATGITMSTREPRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHELPPGRTVTHNAATNTHTTTMNGKAGTKSEDTAVNRGEQTGLGSASKLTEQLNGKSTTKSKVGDIVEFGVSSLSNEGPKIKLSEQHQKDNSGTKDDSVSNDVICHSSSGVPCRSNEQLKGEVKPLSEGTKDCLNKVAIQDTPSTESEFNKQPAADAEPVQS* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0070 506 Gene3D WRKY domain 275 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 ProSiteProfiles WRKY domain profile. 108 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 MobiDBLite consensus disorder prediction 241 269 - -
Vra6g0070 506 MobiDBLite consensus disorder prediction 420 447 - -
Vra6g0070 506 MobiDBLite consensus disorder prediction 242 261 - -
Vra6g0070 506 MobiDBLite consensus disorder prediction 1 106 - -
Vra6g0070 506 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 457 - -
Vra6g0070 506 MobiDBLite consensus disorder prediction 92 106 - -
Vra6g0070 506 MobiDBLite consensus disorder prediction 426 440 - -
Vra6g0070 506 Pfam WRKY DNA -binding domain 114 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 MobiDBLite consensus disorder prediction 481 495 - -
Vra6g0070 506 Gene3D WRKY domain 102 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 MobiDBLite consensus disorder prediction 68 83 - -
Vra6g0070 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 457 IPR044810 GO:0003700
Vra6g0070 506 MobiDBLite consensus disorder prediction 474 506 - -
Vra6g0070 506 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g0070 506 SMART WRKY_cls 113 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 SMART WRKY_cls 288 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 ProSiteProfiles WRKY domain profile. 283 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra6g0070 506 MobiDBLite consensus disorder prediction 382 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0070 Vra-Chr6 450668 454445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0070 98 370 WRKY Transcription Factor Family AT2G04880 48.746 6.95e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra6g0070 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0070 K18834 - gmx:100781219 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0070 6 450668 454445 Vra6g0070 6 450668 454445 ECH