Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0068 ATGCCTGCAGAGAAGTCGAACAGTTGCGACAGCGAAGTGGAGGCGTTCGTGGAGGTTGATCCGACGGGAAGGTTTGGGCGTTACAACGATCTTCTCGGTTGTGGTGCTGTGAAGAAGGTTTACAGAGCTTTTGATCAAGAGGAAGGAATTGAGGTGGCGTGGAATCAGGTTCGGCTCAGGAATTTCAGCGAAGACCCTGTTCTCATCAATCGCCTTCATTCTGAGGTTGAGTTGCTCAGAACCCTCAGCAACAAGTACATCATCGTCTGTTACAGTGTGTGGAAGGATGAGGAACGCCACAACATCAATTTCATCACTGAGATTTGCACTTCCGGGAACCTCAGGGATTACCGCAAGAAGCACCGCCATGTCTCCATTAAGGCTTTCAAGAAGTGGTCCAAACAGGTCCTTGAGGGGTTGGAATATCTTCATACTCATGATCCATGCATCATTCACAGGGATCTCAATTGCAGCAACATCTTTGTTAACGGCAACATTGGCCAGGTGAAAATTGGTGATCTTGGATTGGCTGCAATAGTGGGAAGGAACCATGCTGCTCATTCAATTTTAGGAACACCTGAATACATGGCACCGGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATATACTCCTTCGGAATGTGTTTGCTTGAAATGGTTACAATGGAGATACCCTACAGCGAATGTGACAGTGTGGCGAAGATCTACAAAAAGGTCACTAAGGGAATTAAGCCTCAGGCTTTTAGCAAAGTCACAGAGCCAGAGGTGAAGGAATTCATTGAGAAATGCATAGCACAGCCAAGAGCAAGACCTTCAGCCACAGATCTCCTTAAGGATCCTTTCTTTTATGAACTCAACAATGATGAAGAATCGACGCCATTAAATTGA 894 0.4609 MPAEKSNSCDSEVEAFVEVDPTGRFGRYNDLLGCGAVKKVYRAFDQEEGIEVAWNQVRLRNFSEDPVLINRLHSEVELLRTLSNKYIIVCYSVWKDEERHNINFITEICTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRNHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDSVAKIYKKVTKGIKPQAFSKVTEPEVKEFIEKCIAQPRARPSATDLLKDPFFYELNNDEESTPLN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0068 297 CDD STKc_WNK 24 284 - -
Vra6g0068 297 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0068 297 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0068 297 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vra6g0068 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 1 288 - -
Vra6g0068 297 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Vra6g0068 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 288 - -
Vra6g0068 297 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0068 Vra-Chr6 443976 450734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0068 10 284 MAP Kinase Kinase Kinase AT5G55560 78.182 2.82e-170 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra6g0068 Pkinase 2.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0068 K08867 - gmx:100807414 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0068 6 443976 450734 Vra6g0068 6 443976 450734 ECH