Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0052 ATGGCAGAGCAAAGCATGAAAGAGGAAAGTGCAGAAGAAGTAGTATCTGATGAAGAAGCTTTTCTGTTTGCCATGGAGCTAGCTGGTGGCTCTGCTCTTCCCATGGTTCTGAAGTCAGCTATTGAACTTGGTATCTTAGAAACCATAGCCAAGGCTGGTCCTGGAGCTCATCTTTCTCCTTCTGAAATAGCTGCTCAGATACCAAATATAAAGAACCCTAATGCACCTGCAATGTTGGACCGCATGTTCCGCCTTTTGGCTAGCTACAACATCCTCAAACTTCGATTCCCCGATGGTAATATGTCTGAAAGGCACTATGGTCTTCACCCAAAAGCCAAATACCTTGTCAACAATCAAGATGCTGTGTCTGTGGCTGCTTACTTTCTCATGGAACACGACAAAGCCCTCAAAGAAATGTGGTACAAGTTGACAGAATCAGTCGAGGAGGGTGGATTTCCATTTAACAAGGCTTATGGAATGAATGTCTTTGAGTTCCATGATGCAAATCCAAGATTTAATAGGCTTTTCAATAAGGGGTTGTCTGATTGTTCTAGCATCACGATGAAGAAGATTCTTGAGATTTACAAAGGGTTTGAGGGTGTTGGATCTTTGGTTGATGTTGGCGGTGGAACTGGGGCTGTCATCAGCATGATTGCCTCCAAGTATTCCTCCATGAAGTGTCTTAATTTTGACTTACCCCACGTTATCAAAGAAGCTCCACCTTACGCAGGTGTGGAACATGTGGGTGGAGACATGTTTGTGAGTGTTCCAAAAGCTGACGCCATTTTTATGAAGTGGGTATGTCATGACTGGAATGATGAGCAATGCTTGAAACTGTTGAAGAACTGTTATGATTCTCTTCCCGACACTGGAAAGGTGATTTTAGTTGAAGGGCTTATTCCAGAAACCCCAAATTCCAAGTTAGCTTCAAAGTGTGAGTTTCAAATGGATATTGTGATGTTGTGTCATAGCCCGAATGGGAAAGAGAGAACAAAAAAAGAGTACGAGGCTTTGGCTAAAGGAACCGGATTCCATGGTTTCAGAATAGCATGTTGTGTTTTCAATACTTACGTTATAGAGTTCCTTAAAAAGGCTTAA 1098 0.4244 MAEQSMKEESAEEVVSDEEAFLFAMELAGGSALPMVLKSAIELGILETIAKAGPGAHLSPSEIAAQIPNIKNPNAPAMLDRMFRLLASYNILKLRFPDGNMSERHYGLHPKAKYLVNNQDAVSVAAYFLMEHDKALKEMWYKLTESVEEGGFPFNKAYGMNVFEFHDANPRFNRLFNKGLSDCSSITMKKILEIYKGFEGVGSLVDVGGGTGAVISMIASKYSSMKCLNFDLPHVIKEAPPYAGVEHVGGDMFVSVPKADAIFMKWVCHDWNDEQCLKLLKNCYDSLPDTGKVILVEGLIPETPNSKLASKCEFQMDIVMLCHSPNGKERTKKEYEALAKGTGFHGFRIACCVFNTYVIEFLKKA* 366
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0052 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 363 IPR016461 GO:0008168
Vra6g0052 365 PANTHER O-METHYLTRANSFERASE 15 364 IPR016461 GO:0008168
Vra6g0052 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 361 IPR029063 -
Vra6g0052 365 PANTHER BNAA10G07270D PROTEIN 15 364 - -
Vra6g0052 365 CDD AdoMet_MTases 204 296 - -
Vra6g0052 365 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Vra6g0052 365 Gene3D - 2 115 IPR036388 -
Vra6g0052 365 SUPERFAMILY "Winged helix" DNA-binding domain 17 118 IPR036390 -
Vra6g0052 365 Pfam Dimerisation domain 35 87 IPR012967 GO:0046983
Vra6g0052 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Vra6g0052 365 Pfam O-methyltransferase domain 140 344 IPR001077 GO:0008171
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra6g0052 Vra-Chr6 343490 345457 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0052 15 364 Monolignol Biosynthesis Gene Families AT5G54160 59.943 1.09e-157 445
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0052 K13066 - gmx:100780100 486.493