Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0037 ATGAAAACACTCATTTTCTCAGTCGTTGAGTTCATTGCCGAGAAAGAGATGGCGCAGCTTCCCTGTGACCCCGACGGCGTTTGCATGCGATGCAAGGAGAAACCCCCTTCTTCGCAAACCCTCACTTGCCGGACCTGCGCCACTCCATGGCACCTTTCTTGCCTCCCTGAGCCTCCGGTCTCCGATTCCGACACCCACTGGGAGTGTCCCGACTGCTCTGACCTCTCCAATCCTGTCCCAGTCGCTCCCTCCGACGCCATTCTCCTCGCCGTCCGCGATATTCACTTAGACACGTCACTCTCCGAGCAACAAAAGGCTAAAAAAGCCCAAGAAGTGCTCGCCGGTTCCTCCCATCTTTCTAAGGACAAAAATGCTCCCGATATCTTTGACGGGAGTTTCAACTGCTCTATATGCATGCAACTGCCTGATAGGCCTGTCACGATACCTTGTGGGCATAATTTCTGCCTGAAGTGCTTTGAGAAATGCATCAATCAGGGAACGCGTAAATGTGCGAATTGTCGCACTGTAATCCCTGCAAAGATGTATACTCAGCCAAAAATTAACTATCAGTTGGCTATGGCTATTCGATTGGCTAAGGCAGCGAGGTCTGGGCAGTCTTCTGGGCCTCCTAGAGTGCATCACTTTGTGCGCAATCAGGATCGCCCAGATACTGCCTTTACCACTGATCGGGCGAAGAAAACTGGAAAAGCAAATGCTTGTTCTGGTAAGATTTTTGTTACGGTTCCACCCGACCATTTTGGGCCAATTCCAGCCGAAAACGATCCCAAGAGGAATCGCGGGGTTTTGGTTGGTGACATGTGGGAGGACAGGATGGAATGTCGGCAATGGGGCGCTCATTTACCTCATGTAGCTGGTATCGCTGGACAGAGTAGTTATGGTGCCCAATCTGTTGCGCTTTCGGGTGGTTACGTGGATGATGAGGATCATGGGGAATGGTTCCTTTATACTGGTAGTGGTGGAAGAGATCTGAGTGGAAACAAGCGCACGAACAAAATTCAATCTTTTGACCAGAGGTTTGAAAACATGAATGAAGCTTTGAGACAGAGCTGCCGAATGGGTTATCCTGTTCGTGTTGTAAGGTCGCATAAGGAAAAACGTTCTGCTTATGCACCCGAAGCTGGGGTGCGTTATGATGGGGTCTATAGAATAGAAAAATGCTGGCGCAAGGATGGAATTCAAGGCTGTAAGGTTTGTAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCGCCTTGGACAAGTGATGAATCTGGAGACCGTCCACGACCACTACCTGAGATTGAGGAGTTAATTGGTGCAATTGATATAACAGAAAGGAAGGATGATCCATCGTGGGATTATGATGAAGAAAAGGAGTGCTGGCTGTGGAAGAAGCCTCCTCCAGAAAGTAGGAAATCAGTGGACTCTGGAGATGGTTCAACAGTCAGAGTTAAACGGAAGTTGAACATCGCGTCTGAGAGAGAAAAGCTGCTGAAAGGGTTTCGTTGCGGAATATGCCGCAAGGTGATGCAGTTACCCATTACTACACCTTGTGGTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCATTTGCCGGACAAAGTTTGATGAGGGAAAGGTCACGTGAAGGTGGACGAAGTTTGCGAGCACAAAAGAATGTTAAGAAATGCCCATCATGTTCTAATGACATTGCTGACTTTCTTGAGAATCCACAGGTTAACAGGGAAATGCTGACTTTGATAGAATCATGGGGAAAGAAGCCTGTAGAAGAAAACCCTGAAGAGTCAGATGAAAATGACGAAAATGATGATAATGATGAAAGTCTGGATGATGCAGCTGAGGTTTCGAAACCTTCAGATTCTGCTGATAATGTCCTGGAGGAAATTAAGGACAATGATCTGAATCAGCAACATAAGCGCAGGAAGGAGTGA 1932 0.4783 MKTLIFSVVEFIAEKEMAQLPCDPDGVCMRCKEKPPSSQTLTCRTCATPWHLSCLPEPPVSDSDTHWECPDCSDLSNPVPVAPSDAILLAVRDIHLDTSLSEQQKAKKAQEVLAGSSHLSKDKNAPDIFDGSFNCSICMQLPDRPVTIPCGHNFCLKCFEKCINQGTRKCANCRTVIPAKMYTQPKINYQLAMAIRLAKAARSGQSSGPPRVHHFVRNQDRPDTAFTTDRAKKTGKANACSGKIFVTVPPDHFGPIPAENDPKRNRGVLVGDMWEDRMECRQWGAHLPHVAGIAGQSSYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKIQSFDQRFENMNEALRQSCRMGYPVRVVRSHKEKRSAYAPEAGVRYDGVYRIEKCWRKDGIQGCKVCRYLFVRCDNEAAPWTSDESGDRPRPLPEIEELIGAIDITERKDDPSWDYDEEKECWLWKKPPPESRKSVDSGDGSTVRVKRKLNIASEREKLLKGFRCGICRKVMQLPITTPCGHNFCKACLEGAFAGQSLMRERSREGGRSLRAQKNVKKCPSCSNDIADFLENPQVNREMLTLIESWGKKPVEENPEESDENDENDDNDESLDDAAEVSKPSDSADNVLEEIKDNDLNQQHKRRKE* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0037 643 SUPERFAMILY FYVE/PHD zinc finger 13 78 IPR011011 -
Vra6g0037 643 ProSiteProfiles Zinc finger RING-type profile. 135 174 IPR001841 -
Vra6g0037 643 Gene3D - 234 430 IPR036987 -
Vra6g0037 643 SUPERFAMILY PUA domain-like 237 432 IPR015947 -
Vra6g0037 643 SMART ring_2 135 173 IPR001841 -
Vra6g0037 643 SMART ring_2 503 560 IPR001841 -
Vra6g0037 643 SMART ring_2 28 72 IPR001841 -
Vra6g0037 643 SMART PHD_3 27 73 IPR001965 -
Vra6g0037 643 Pfam Zinc finger, C3HC4 type (RING finger) 134 178 - -
Vra6g0037 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 200 IPR013083 -
Vra6g0037 643 Pfam SAD/SRA domain 266 414 IPR003105 -
Vra6g0037 643 ProSiteProfiles Zinc finger RING-type profile. 503 561 IPR001841 -
Vra6g0037 643 MobiDBLite consensus disorder prediction 594 610 - -
Vra6g0037 643 SUPERFAMILY RING/U-box 497 585 - -
Vra6g0037 643 MobiDBLite consensus disorder prediction 584 643 - -
Vra6g0037 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 77 IPR013083 -
Vra6g0037 643 Pfam RING-type zinc-finger 503 544 IPR027370 -
Vra6g0037 643 ProSiteProfiles YDG domain profile. 263 411 IPR003105 -
Vra6g0037 643 SMART G9a_1 258 415 IPR003105 -
Vra6g0037 643 SUPERFAMILY RING/U-box 127 194 - -
Vra6g0037 643 ProSitePatterns Zinc finger RING-type signature. 518 527 IPR017907 -
Vra6g0037 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 618 IPR013083 -
Vra6g0037 643 ProSitePatterns Zinc finger PHD-type signature. 28 72 IPR019786 -
Vra6g0037 643 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 17 638 - -
Vra6g0037 643 MobiDBLite consensus disorder prediction 611 643 - -
Vra6g0037 643 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 17 638 IPR045134 -
Vra6g0037 643 ProSiteProfiles Zinc finger PHD-type profile. 25 75 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0037 Vra-Chr6 259353 262727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0037 19 586 C2H2 Transcription Factor Family AT5G39550 60.481 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0037 K10638 - gmx:100781044 1011.13