Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0034 ATGCCTGCACAAGCTCTGCTATCATCTTCATCTCTTGTCCTTTCAGCGGAGGCTGCTAGACAGACTCTCGGACCACGATCACACCAATCTCCCCTTGCCTTCTCCCGAAAAGCCTCCTTCATTGTTAAGGCAGCTTCTACTCCCCCTGTCAAGCAAGGAGCAGACAGACCTTTATGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCCGGTGACTATGGATTTGACCCTCTTGGACTTTCAGACCCTGAAGGAACAGGAGGGTTCATCGAGCCGAAATGGCTAGCGTATGGTGAGATCATCAATGGTCGTTATGCAATGTTGGGTGCAGTTGGTGCCATAGCACCTGAAATTCTCGGAAAGGCTGGTCTGATCCCTCAGGAGACAGCACTCCCATGGTTCAGAACCGGTGTGATCCCACCTGCAGGAACATACAACTACTGGGCAGACTCGTACACGCTCTTTGTGTTTGAGTTGGCACTGATGGGATTTGCAGAGCACAGAAGATTCCAAGACTGGGCGAAACCAGGGTCTATGGGGAAACAATACTTCTTAGGACTAGAAAAAGGTCTTGGAGGTTCTGGTGATCCAGCATACCCCGGAGGACCTTTGTTTAACCCTCTTGGTTTTGGCAAGGATGAGAAGTCGCTGAAGGATTTGAAGCTGAAGGAAGTCAAGAATGGAAGGTTGGCTATGTTGGCAATCTTGGGTTACTTTGTTCAAGCTCTTGTGACAGGTGTTGGTCCATACCAGAACCTCCTAGATCATCTTGCTGACCCTGTTCACAACAACATCTTGACCAGTCTCAAGTTCCACTGA 831 0.491 MPAQALLSSSSLVLSAEAARQTLGPRSHQSPLAFSRKASFIVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVIPPAGTYNYWADSYTLFVFELALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0034 276 Pfam Chlorophyll A-B binding protein 67 246 IPR022796 -
Vra6g0034 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 275 IPR001344 GO:0009765|GO:0016020
Vra6g0034 276 Gene3D Chlorophyll a/b binding protein domain 58 275 - -
Vra6g0034 276 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 8, CHLOROPLASTIC 1 275 - -
Vra6g0034 276 SUPERFAMILY Chlorophyll a-b binding protein 55 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0034 Vra-Chr6 237878 239235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0034 19 276 Chloroplast and Mitochondria Gene Families AT1G61520 85.659 3.12e-164 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0034 K08909 - gmx:100784090 513.072