Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0029 ATGGAGATGCAACAGCTCCTCAGTATGGGCTTCCCCGATGAGTTAGCCGCCCAAGCCTTGGCCGCCACCGGCGGTAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAATCCAGCGCCGCCAACACCTCCACATTCCAGCCCAAGCTTGATCGCTTCTTCCATTCTTCTCAATCCTCCACACCTCCACAATCGCAATCACAGGAGGAAGAAGAAGAAGACGAAGAACCTTCCAAACGTCCCAGGCCTTCTCCACTTTCTGCGCAGAATCCATCGCCACAGCCACAGCCACAGCAACAAAACTGGCCCCCTTTCTTCTTCAAAACCGCAGAGAAGAAACACGCCAACACTCACATTCACCAACCCTTGTACGAGCGCTTGCGTCCCAGAACCCTTGACGACGTCGTAGGGCAGGACCATCTCCTCGCCGCCAACTCCCTTCTTCGCTCCGCAATCCAACGCAACCGCCTCCCCTCCATCCTCTTGTGGGGTCCACCTGGTACTGGTAAGACCACTATCGCCAAAGCCATCGTTAAATCTTCAACCTCAACACGTTACCGGTTTGTCTCCTTATCCGCCGTCACTAGTGGCGTTAAGGACGTGAGGGACGCCGTTGACGAGGCCAGAAAACTCAGACTTAAATCCAACCAATCCACCGTTCTCTTCGTGGACGAGGTTCACAGGTTCAACAAGTCCCAGCAGGACTCTTTCTTACCCGTCATTGAAGACGGCAGCATTGTATTCGTTGGAGCCACCACTGAGAACCCTTCTTTCCATTTGATTACACCTCTCTTGTCTCGCTGCCGTGTCCTCACCCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGCGCTGTCAGTGACACTGACAGAGGATTGATGCAAAGCGCGGGGGTTCAAGTTGATGTTAAAGAGGATGTTGTTGATTATATAAGCAACAATTGTGATGGAGATGCTCGGGTGGCCCTTAATGCTCTGGAGATTGCAGCTGTTACTGCAGCAGCGAGGGTACAACATGGTAAACAAAAAGAAGAAGGGGTGGAAGATCTTCACACAAACGAGGATTATAAGGTTGCTGCTGCTGCTGTTGTTAGTGTTGATGATGCAAGGGAGGCACTTCAGTGCAAGCATCTTGCTTACGATAAAGCTGGGGAAGAGCACTATAATCTAATCAGCGCGCTGCACAAGTCTATGAGGGGAAGCGACGCGAATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGAGGTGAAGAGCCTCTTTACATTGCACGCAGACTCATACGATTCGCAAGTGAGGATGTTGGTTTGGCTGACCCATTAGCTCTTAATCAGGCTGTTTCTTGCTACCAAGCTTGCCACTTCTTGGGAATGCCCGAATGCAATGTAATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCACCTAAATCTGTTGCGGTTTATCGAGCCTTAGGGGCCGCGCAGAAGGCAGTGAAGGAATCTGCTGGACAGAATGAGGGGGTGCCTCTACATTTGAGGAATGCTCCAACCAAATTAATGAAGGAAATTGGGTATGCGAAAGGATACATCTACCCCCCAGACAACCCTTCCTCCACACAGACTTACTTGCCACCTTCACTTCAAGGCTACAAGTTCCTTGATTGGCCTGACAGGATTCCTTATGATGGATGA 1689 0.5074 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSSAANTSTFQPKLDRFFHSSQSSTPPQSQSQEEEEEDEEPSKRPRPSPLSAQNPSPQPQPQQQNWPPFFFKTAEKKHANTHIHQPLYERLRPRTLDDVVGQDHLLAANSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVKSSTSTRYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQSTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVSDTDRGLMQSAGVQVDVKEDVVDYISNNCDGDARVALNALEIAAVTAAARVQHGKQKEEGVEDLHTNEDYKVAAAAVVSVDDAREALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRALGAAQKAVKESAGQNEGVPLHLRNAPTKLMKEIGYAKGYIYPPDNPSSTQTYLPPSLQGYKFLDWPDRIPYDG* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0029 562 Gene3D - 483 558 - -
Vra6g0029 562 MobiDBLite consensus disorder prediction 55 105 - -
Vra6g0029 562 SUPERFAMILY post-AAA+ oligomerization domain-like 389 555 IPR008921 GO:0003677|GO:0006260
Vra6g0029 562 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 166 185 - -
Vra6g0029 562 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 558 562 - -
Vra6g0029 562 Pfam UBA/TS-N domain 4 35 IPR015940 -
Vra6g0029 562 MobiDBLite consensus disorder prediction 86 102 - -
Vra6g0029 562 Pfam MgsA AAA+ ATPase C terminal 405 551 IPR021886 -
Vra6g0029 562 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 557 - -
Vra6g0029 562 Gene3D - 2 40 - -
Vra6g0029 562 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Vra6g0029 562 Pfam AAA C-terminal domain 305 404 IPR032423 -
Vra6g0029 562 Gene3D - 112 276 IPR027417 -
Vra6g0029 562 Gene3D - 278 355 - -
Vra6g0029 562 Pfam ATPase family associated with various cellular activities (AAA) 162 272 IPR003959 GO:0005524|GO:0016887
Vra6g0029 562 SMART AAA_5 158 278 IPR003593 -
Vra6g0029 562 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Vra6g0029 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 355 IPR027417 -
Vra6g0029 562 CDD AAA 138 271 - -
Vra6g0029 562 CDD HLD_clamp_RarA 278 339 - -
Vra6g0029 562 Gene3D - 379 482 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0029 124 356 Core DNA Replication Machinery Family AT1G77470 27.197 9.66e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0029 K07478 - gmx:100799257 882.478