Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0022 ATGGAAAAGAGAGGTGACGGTGCTGATGCTCAGCCTCGATTTGACGCTGATTTTGTGCCAGATCCTTCCCAGAGATGTACTGGAAATGAAAAGGGTGACAAGGCCCCCAAGATACCTCAGTCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCGTGGTCACTAGATATAGCATTATCTACTTTTGCAAAAACCGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCAGTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTTACTTCCTCAGAAGGGCGTCAAGACAAATACTTGTTCCCAGGATTTTGAAAGGGCAGGTCTAATAGTTCCTAAAACTCCCTTATCAGATGCTCCTTTGGATAAATCTTCCATTCATCCGTCTCTTAAAAATAAGGTCATCTCCCCATCAATAAAAGGTGCACACTCATTGCCAGTTACTCCATTTGGAACTTCAGCTTCAGAGAACGAAGATGGAAGACATCTTAAAATGGATGGTCATCCGCATATTACTCGATCATTTTCAGTCCCAGTTAAAAGCAAAGCCGCTAGTTTAAGGGTTACAGATTCCAGGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGCGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGACACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAGAGGTGATCTTGCACTTGCTCACCGGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTGAAAATTTGCAGTCGTGACACTACAGCTAGGCAGACATCAAATGTGCCACCACGGGCAGAGGTATCTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTTCTTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTTGCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATTTATTTTATACTATTCTCAATTTAAATGCAGTTCTCTCGATTCTCCTTTCCTCATTCACTGGGTTTGGCATTACAATCAGTACCAACTCTCTGGTTATGGAATTTATTGGATGGAGAAATATTTGGAGGATTCAATCCTCTATCCAGAATGTTAACATGACAGAGCAACCGCGTCGACAGCATGTAAATCATCAGAGGCAGGAAAATCAAACAGAACATCAACCACAAAGACAATCATCAACGACGCCAGAACTGCCGCAGCATCATGGCAACAGTTGA 1485 0.435 MEKRGDGADAQPRFDADFVPDPSQRCTGNEKGDKAPKIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSSRGLPPRPNSAKVRSSMRTLLPQKGVKTNTCSQDFERAGLIVPKTPLSDAPLDKSSIHPSLKNKVISPSIKGAHSLPVTPFGTSASENEDGRHLKMDGHPHITRSFSVPVKSKAASLRVTDSRGLIRVISARQTVRRKSSDGGLVPEIAIEDDTEDIPEEQAVCRICLVELGEGGNTLKMECSCRGDLALAHRECAVKWFSIKGNRTCDVCKREVQNLPVTLLKICSRDTTARQTSNVPPRAEVSYYRIWQDVPVLILVSMLSYFCFLEQLLVSDLGPRALAISLPFACVLGLLSSMIASTMVSRSFVWAYACFQFAILILLAHLFYTILNLNAVLSILLSSFTGFGITISTNSLVMEFIGWRNIWRIQSSIQNVNMTEQPRRQHVNHQRQENQTEHQPQRQSSTTPELPQHHGNS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0022 494 MobiDBLite consensus disorder prediction 65 94 - -
Vra6g0022 494 CDD RING_CH-C4HC3_MARCH 242 290 - -
Vra6g0022 494 Pfam RING-variant domain 242 289 IPR011016 GO:0008270
Vra6g0022 494 MobiDBLite consensus disorder prediction 65 82 - -
Vra6g0022 494 ProSiteProfiles Zinc finger RING-CH-type profile. 234 296 IPR011016 GO:0008270
Vra6g0022 494 SMART ringv_2 241 290 IPR011016 GO:0008270
Vra6g0022 494 PANTHER OS02G0165000 PROTEIN 30 469 - -
Vra6g0022 494 PANTHER OS02G0165000 PROTEIN 30 469 - -
Vra6g0022 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 297 IPR013083 -
Vra6g0022 494 MobiDBLite consensus disorder prediction 1 49 - -
Vra6g0022 494 MobiDBLite consensus disorder prediction 474 494 - -
Vra6g0022 494 MobiDBLite consensus disorder prediction 457 494 - -
Vra6g0022 494 SUPERFAMILY RING/U-box 238 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0022 Vra-Chr6 180143 186750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0022 228 296 C3H Transcription Factor Family AT2G37950 44.286 4.35e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0022 - - gmx:100789461 724.931