Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0019 ATGGGTTGCTGCCAATCGTCGATGCTGCTGAGAGTGGGTGAGAGGGAGACTCACCCGGAGAGGGAAAAGGAAAGGGAAAAGGAAAAGGAAAAGGAGAAGGAGAAAGAGCAGGCGTACGGAACACACCAGAGGACTTCTGCCGGAGAGGGAGAGGGAGATGGAGACAAAGAGGGGGTCGATTTCTCCTTCGCCGAGTTCTCGCTGCCGGAGCTCAAGGCGGCCACCAATAATTTCAGCTCAGAGTATATCGTCTCTGAGAGTGGTGATAAGGCGCCTAACCTCGTCTACAAGGGACGTCTCCAGAACCAGAGCCGTTGGATTGCAGTCAAGAAGTTCAGCAAGGCTGCCTGGCCGGATCCCAAGCAATTCGTCGAAGAGGCTTCCGGCGTTGGCAAGTTGCGCCACCCAAGGCTCGCTAATTTAATCGGTTACTGTTGCGACGGCGATGAGAGGCTCCTCGTTGCGGAGTACATGCCCAATGACACTCTCGCCAAGCATCTCTTCCACTGGGAAACTCAGACTATTGAGTGGGCCATGCGCTTGCGGGTTGCTCTTTACATCGCACAGGCTTTGCATTATTGCAGTTCGGAGGGGCGCCCCCTGTACCATGACTTGAATGCTTACCGTGTTCTCTTCGACCAGGAAGGTGATCCTCGTCTCTCTTGTTTCGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACTAATCTTGCTTATACACCTCCTGAATATTTAAGAAACGGAAGGGTCACTCCTGAAAGTGTCATTTACAGCTTTGGAACTGTCCTTCTAGACCTTCTCAGTGGCAAACACATTCCTCCCAGTCATGCACTTGATATGATACAGGGGAAGAACAATATGCTCTTAATGGATTCACATTTGGAGGGAAAGTTTTCAACAGAAGAAGCAACAGTGGTTGTTAATCTTGCCTCCAAATGCTTGCAATATGAACCGAGGGAGCGGCCTGATACAAAAGATTTGGTCACAACACTTGCTCCATTGCACACAAAACCCGATGTTCGTTCTCACATAATGCTTGGAATTCCAAAGCACGAGGAAGCTCCATCAACCCCACAACGCCCTCTTTCAGCAATGGGAGAGGCTTGTTCAAGAATGGACCTTACTGCAATACATCAGATCTTGGTCGCGACACACTACAGAGATGATGAAGGAACTAATGAGCTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAAGACTTCAAGACAGCCATTGATAACTATTCCCAGTTTATTGATGTGGGAACGATGGTCTCCCCAACTGTTTTTGCGAGACGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCTGCACTACGTGACGCAATGCAAGCACAGTGCGTTTATCCAGACTGGCCGACGGCTTTCTACATGCAATCAGTTGCTCTTGCGAAGCTGGACATGCACAAGGATGCGGCTGATATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGACAAAGAGGAGCAAGAGGATCGTAA 1557 0.4933 MGCCQSSMLLRVGERETHPEREKEREKEKEKEKEKEQAYGTHQRTSAGEGEGDGDKEGVDFSFAEFSLPELKAATNNFSSEYIVSESGDKAPNLVYKGRLQNQSRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDQEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGARGS* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0019 518 Gene3D Phosphorylase Kinase; domain 1 54 157 - -
Vra6g0019 518 SUPERFAMILY TPR-like 410 511 IPR011990 GO:0005515
Vra6g0019 518 Gene3D Transferase(Phosphotransferase) domain 1 159 350 - -
Vra6g0019 518 ProSiteProfiles Protein kinase domain profile. 81 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0019 518 MobiDBLite consensus disorder prediction 13 40 - -
Vra6g0019 518 MobiDBLite consensus disorder prediction 1 58 - -
Vra6g0019 518 SUPERFAMILY Protein kinase-like (PK-like) 62 337 IPR011009 -
Vra6g0019 518 Gene3D Tetratricopeptide repeat domain 407 516 IPR011990 GO:0005515
Vra6g0019 518 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 1 516 - -
Vra6g0019 518 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 516 IPR045845 GO:0004672|GO:0009742
Vra6g0019 518 Pfam Protein kinase domain 95 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0019 Vra-Chr6 165315 172207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0019 16 357 Glycoside Hydrolase AT3G07070 32.603 4.34e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vra6g0019 Pkinase 1.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0019 K14500 - gmx:100808907 981.474