Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0008 ATGGGAAACTGCTGGGGTTCTCAGCCTCACAGCGAGGTGACCCCAACAACCACCGGCAACCTCAGTACAGCCACACCGGGGATATCTCAGACCATCAGCGGCAGCACCACCACCAGCGGCAGCTATACTACTACCACAACCACAACTACTACTACTTCTGGAAGTGGGAACAGCTCCGTAAATAGCAAGTTCTCGGTGGCAAGCGGTGATCAACCTTATCCAACTGGGCAGATCTTACCCACCTCTAATTTGAGGATTTTCACCTTTGGCGACTTGAAGGCTGCGACTAAGAATTTCAGGGCTGATACAGTTCTTGGAGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGGGCACGTCAAAGGGTGGAAGCGGAACAGTCATTGCCGTCAAAAAACTCAACTCTGAAAGCTTACAAGGAATTGAGGAGTGGCGGTCCGAAGTAAACTTTCTAGGTCGCCTTTCCCATCCTAATCTTGTTAAGCTGTTGGGTTACTGTTTGGAGGAAACAGAGCTTCTTCTCGTCTATGAATTCATGCAAAAGGGGAGCTTAGAAAACCATCTATTTGGAAGGGGTTCTGCCGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCAGCTCGTGGTCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGATTTCAAAGCCTCAAATATTTTGCTTGATGGGTCCTATAACGCTAAGATATCAGATTTTGGCTTGGCAAAGTTGGGTCCTTCAGCTAGTCAATCTCACGTGACAACTAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTCAAGAGTGATGTATACGGGTTTGGAGTTGTTTTGGTGGAAATACTAACAGGGTTACGAGCACTTGATTCGAACCGTCCAAGCGGGCAACATAATCTAACAGAGTGGGTGAAACCATACTTGCATGACAGAAGAAAGTTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAGTTTCCATCGAAAGCTGCATTCCGTATAGCTCAGCTTGCTTTAAAATGTCTTTCATCTGAACCCAAACAGCGGCCATCAATGAAGGAGGTTTTGGAGAGTTTGGAGCGAATTCAAGCAGCCAATGAAAAGCCTGTGGAGCCTAAATTACGATCTAATCATCCTCGTCAAGCCCACCAGGCTGTCCACCATCGTTCTCCACTTAAAGACGGTAGTTATTAG 1251 0.466 MGNCWGSQPHSEVTPTTTGNLSTATPGISQTISGSTTTSGSYTTTTTTTTTTSGSGNSSVNSKFSVASGDQPYPTGQILPTSNLRIFTFGDLKAATKNFRADTVLGEGGFGKVFKGWLEEKGTSKGGSGTVIAVKKLNSESLQGIEEWRSEVNFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDSNRPSGQHNLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLALKCLSSEPKQRPSMKEVLESLERIQAANEKPVEPKLRSNHPRQAHQAVHHRSPLKDGSY* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0008 416 MobiDBLite consensus disorder prediction 1 67 - -
Vra6g0008 416 MobiDBLite consensus disorder prediction 385 416 - -
Vra6g0008 416 PANTHER BNAA09G08980D PROTEIN 24 409 - -
Vra6g0008 416 PANTHER OS01G0588500 PROTEIN-RELATED 24 409 - -
Vra6g0008 416 Gene3D Phosphorylase Kinase; domain 1 83 182 - -
Vra6g0008 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vra6g0008 416 SUPERFAMILY Protein kinase-like (PK-like) 78 380 IPR011009 -
Vra6g0008 416 ProSiteProfiles Protein kinase domain profile. 99 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0008 416 Pfam Protein tyrosine and serine/threonine kinase 102 378 IPR001245 GO:0004672|GO:0006468
Vra6g0008 416 Gene3D Transferase(Phosphotransferase) domain 1 183 403 - -
Vra6g0008 416 ProSitePatterns Protein kinases ATP-binding region signature. 105 136 IPR017441 GO:0005524
Vra6g0008 416 CDD STKc_IRAK 105 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0008 Vra-Chr6 59380 62289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0008 69 386 Receptor kinase-like Gene Family AT4G02010 48.447 7.75e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra6g0008 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0008 - - vun:114194495 749.969