Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0006 ATGAATGTCCAGCTTGCCTATCGTAGGTTCTTCATGAATCTGCTATTCCTTGCCTTCACATTCATCCTATTACATGGATCATCAACAGCAAGAGAAGAAGCTTCCCGACATGATGCCGATGATGTCGTAAATATCGGTGCCATATTCACATTGCAAACTATAAACGGCAAAGTTTCCAAAATTGCCATCGAAGCAGCTGAGCAAGACGTAAACTCCGATCCCCGCATCCTGGGGGGACGCAGATTGTCCATAAAGATCCATGATTCCAACTTCAGTAGTTTTCTTGGCTTCATTGGGGCCCTCAAGTTCTTGATGACCGACACAGTGGCTATAATCGGTCCACAAACCTCAGGAATGGCCCATGTGCTTTCGCATCTCGCAAATGAGCTCCATGTTCCCCTGCTCTCCTTCACGGCTCTGGATTCCACCCTAACACCTCTCCAGTATCCTTATTTTGTCCAAACAGCGCCCAGCGATCAGTTCCAGATGACTGCAATTGCAGACATGATTAGTAATTATGGTTGGAGAGAAGTCATAGCAATATTCAATGATGATGATCCGGGTCGAAATGGGGTAACTGTTTTGGGGGATAAACTTGCAGAAAGGGGTTGTAAGTTGTCTTACAAAGCAGCACTGCCTCCTGAACCAACCGCCACTCCAAGCTTTATTACCAGTCAGTTAGTGAAGATTAAGAGCATGGAGTCTCGAATAATCGTTTTACACACCTTCGCCAAAACTGGTCTCCTGGTTTTTGACCTGGCTCAAAAACAAGAAATGATGTCCAAAGGGTATGTTTGGATAGCTACTGCATGGTTATCGACTGTTTTAGATTCATCTTCTGCTTCAAACACTTCTAATTCAATTCTAGGAGCTCTTACCCTTCGCCCTCACACCCCTCAATCCTTAAAAAAACAGGCATTTATCTCAAGGTGGAAACACTTAAGTAATGGCTCAATTGGGTTAAATCCATACGGACTCTATGCGTATGATTCTGTGTGGACGATTGCTCGGGCACTGAACTTATTCTTTGATCAGAAAGGAAAGGTTTCATTTTCTAACAAAAATTTAAGTAGTACGGGGGAAGAGAATCTGAATCTGGGTGCTTTGAGCGTTTTTGAAGGAGGGAAGCAACTACTTGATAACATATTGGGCATTAATATGACTGGATTGACTGGACCTATTCACTTTGGTTCAGATAGATCTCCTCCACATCCATCATATGAAATCATTAATGTAATTGCCACAGGTTTTCGGAGCATCGGTTACTGGTCTAATTACTCTGGACTCTCCGTAATCACCCCTGAGAAACTTCAGTTGAAGCCTGCCAATCGTTCAATTTCAAGCCAGCATCTAAAGCCTGTCATATGGCCTGGAAATACCATAGAAAGGCCTCGTGGATGGGTTTTCCCACATAATGGGAGGCAACTGAGAATTGGAGTTCCCAACAGAGTTAGTTATAGAGCCATAGTCTCACAAATAAATGCCTCCAATGCAGTTCAAGGATATTGCATAGAGATATTCCGAGCTGCCATAAAACTTCTTCCATATACAGTTCAGTATAAGTTCGTTCTATTTGGAGATGGAGAAAATAACCCAAGCTACTATGATCTTGTCAACATGATTACTCTTGATGTTTTCGATGTTGCTGTAGGTGACATTGCTATCGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCCGGTAAACAAATTGAAGTCGCATGCTTGGGCTTTCTTGCGACCATTTACTCCAATGATGTGGGGTGTCACTGCATTTTTTTTCCTTTTTGTTGGAACAGTGGTGTGGATTCTTGAACATAGAACAAACGATGACTTTCGGGGGCCGCCAAAGGAACAGATAGTTACGGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTGAGTCCACTTGGTCGAGTTGTGTTGATTATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTGACAGTGCAGCAGCTGTCTTCACCCATAACAGGAATTGATAGCTTGATATCCAGCAATGAACGTATAGGATTCCAAGTAGGTTCGTTTGCTGCAAACTATCTAACCGAGCAACTCAACATCCCCAAACATAGGCTTGTTCCTCTTGGCTCACCAGAAGAATATGCCATTGCCCTTGAAAGAGGAACAGTTGCAGCAGTGGTGGATGAAAGGCCATATGTAGAACTATTCCTTTCAGACCACTGCGAATTCTCAATCAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCTAGGGACTCTCCTTTTGCAGTTGATATGTCAACAGCCATTTTAACTTTATCTGAGAATGGTGAACTTCAGAGGATCCATGAAAAGTGGCTTTCAGAAAAGGCTTGTGCTCATCGCAGTAGTGAGAATGAACAACTTCAATTGAATAGCTTCAAGGGCCTGTTTCTAATATGTGGGATAACATGTTTCATGGCGCTTTTGATATACTTCTTATCTATGCTACACCAGTTCAGCAAAAAATCCCCTATAAAAGCTGGTCCTTCAAATCGTGACAGCTCACGTTCTACACGCATCCAAACATTCCTGGATTTTGTGGACGAGAAAGAAGCCGTATCTCCCAGGAAATTAAAAAGAAAACTGGAACATATTTCATCAAATCGTTTGAGGAGCATATCAAAGAGCAGGAGTGAGAGAGTACAGTAA 2766 0.427 MNVQLAYRRFFMNLLFLAFTFILLHGSSTAREEASRHDADDVVNIGAIFTLQTINGKVSKIAIEAAEQDVNSDPRILGGRRLSIKIHDSNFSSFLGFIGALKFLMTDTVAIIGPQTSGMAHVLSHLANELHVPLLSFTALDSTLTPLQYPYFVQTAPSDQFQMTAIADMISNYGWREVIAIFNDDDPGRNGVTVLGDKLAERGCKLSYKAALPPEPTATPSFITSQLVKIKSMESRIIVLHTFAKTGLLVFDLAQKQEMMSKGYVWIATAWLSTVLDSSSASNTSNSILGALTLRPHTPQSLKKQAFISRWKHLSNGSIGLNPYGLYAYDSVWTIARALNLFFDQKGKVSFSNKNLSSTGEENLNLGALSVFEGGKQLLDNILGINMTGLTGPIHFGSDRSPPHPSYEIINVIATGFRSIGYWSNYSGLSVITPEKLQLKPANRSISSQHLKPVIWPGNTIERPRGWVFPHNGRQLRIGVPNRVSYRAIVSQINASNAVQGYCIEIFRAAIKLLPYTVQYKFVLFGDGENNPSYYDLVNMITLDVFDVAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVNKLKSHAWAFLRPFTPMMWGVTAFFFLFVGTVVWILEHRTNDDFRGPPKEQIVTVLWFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSNERIGFQVGSFAANYLTEQLNIPKHRLVPLGSPEEYAIALERGTVAAVVDERPYVELFLSDHCEFSIRGQEFTKSGWGFAFPRDSPFAVDMSTAILTLSENGELQRIHEKWLSEKACAHRSSENEQLQLNSFKGLFLICGITCFMALLIYFLSMLHQFSKKSPIKAGPSNRDSSRSTRIQTFLDFVDEKEAVSPRKLKRKLEHISSNRLRSISKSRSERVQ* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0006 921 SMART GluR_14 477 814 IPR001320 GO:0015276|GO:0016020
Vra6g0006 921 Gene3D - 158 429 - -
Vra6g0006 921 Pfam Bacterial extracellular solute-binding proteins, family 3 493 813 IPR001638 -
Vra6g0006 921 PIRSF IGluLR_plant 8 921 IPR017103 -
Vra6g0006 921 Gene3D - 61 404 - -
Vra6g0006 921 Gene3D - 473 586 - -
Vra6g0006 921 Gene3D - 779 811 - -
Vra6g0006 921 SMART AABind_6 485 815 IPR001638 -
Vra6g0006 921 Coils Coil 912 921 - -
Vra6g0006 921 SUPERFAMILY Periplasmic binding protein-like II 454 814 - -
Vra6g0006 921 Pfam Ligand-gated ion channel 814 842 IPR001320 GO:0015276|GO:0016020
Vra6g0006 921 SUPERFAMILY Periplasmic binding protein-like I 40 468 IPR028082 -
Vra6g0006 921 Pfam Receptor family ligand binding region 61 412 IPR001828 -
Vra6g0006 921 PANTHER GLUTAMATE RECEPTOR 3.6 32 911 - -
Vra6g0006 921 CDD GluR_Plant 474 812 - -
Vra6g0006 921 Gene3D - 747 778 - -
Vra6g0006 921 Gene3D - 587 722 - -
Vra6g0006 921 CDD PBP1_GABAb_receptor_plant 44 431 IPR044440 -
Vra6g0006 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Vra6g0006 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 150 169 - -
Vra6g0006 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Vra6g0006 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0006 Vra-Chr6 35660 39460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0006 12 919 Ion Channels AT2G17260 60.022 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0006 K05387 - gmx:100793969 1273.07