Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2857 ATGGTGCTGCTCAGATGTTTCTCAATGACACTTTTGCAATGGTGTTTTTTGGCTTGCTTAGTTTGCTTGTCACTAGGGCTTAATAATAATCAAGCCCCCTGTGACCCTCATGATTTATCAGCTCTGAAGAAGTTTGCCGGAGAACTTACAAGTGGCTCTATCATCGCAGCATGGTCCAATGACTCTGTCTGCTGCAACTGGCGTGGAGTTGTTTGTGATAATGTGACTGGAGGTGGTGGAACAGTTACGAGTAGAGTGACCAAGTTGATCCTGCCTGAAATGGGTCTTAATGGTACAATTTCACCCTCTTTAGCACAGCTAGATCAGCTCAGTGTGCTGAATCTTTCATTAAATCACCTTAAAGGTGGATTGCCTGTGGAGTTCTCCCAGTTGAAGCTGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCTGGACCTGTTGCTGGAGCTCTTTCTGGTCTGCAATCCATTGAAGTATTGAATATTTCTAGCAATTCACTTTCTGGAGTTCTCTTCCCTTTTGGGGAGTTCCCTCTTCTCCATGCTCTGAACGTGAGCAACAATTCATTCACTGGCGGATTCAATTCACAAATTTGCAGTGCTACCAAAGAACTTCACACCCTTGATTTGTCAGCAAATAATTTTATTGGTGGTCTTGAAGGCTTGGACAACTGCACCGCATCTCTCCAACGGCTGCATTTGGATTCCAATTCGTTTACTGGCCCTCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGGAGCTCTCAGTCTCTTCCAACAATATTTCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACCTAAAAATTCTGGTGCTTTGTGGAAACAGGTTTTCTGGGGAACTTCCAAATGTATTTGGGAATCTTTTGCAGCTAGAAGAATTAGAAGCTCATGGCAATTCATTTTCTGGATCCTTGCCCTCCACCTTGGCTTCATGCTCTAAGCTTAGGGTGCTTAACCTCCGAAACAATTCCTTTTCAGGGCCTATTGGTCTTAATTTCACTGGCTTGTCTAATCTTCAAACACTCGACCTTGCTACTAATCATTTCACTGGACACCTTCCAACTTCCCTGTCCTTTTGTCGTGAATTGAAGGTTTTAAGCCTTGCTAGGAATGGCTTAACTGGCTCTATCCCTGAAAACTATGCAAACCTAAGTTCACTTTTGTTTGTGTCCTTTTCAAACAACAGCATTGAGAACTTATCTCGGGCAGTATCTGTTTTGCAGCAGTGCAAAAATCTCACTACTCTTATCCTCACCAAGAATTTCCATGGTGAGGAAATTCGGGAAAGTACCATAGTAGGATTTGAGAGCCTTATGATTTTAGCACTTGGAAATTGTGGTCTTAAAGGTCACATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGACTTGTCTTGGAACCGTTTGAATGGCAGTGTTCCTTCTTGGATTGGTCAGATGGACAGTTTGTTCTATATGGATTTCTCGAATAATTCTCTCACAGGAGAAATACCGAAAAGTTTGACAGAGTTGAAGGGACTCATGTGTGCAAACTGTAATAGAGAAAATCTTGCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGCAAGTGGACTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCAATTTACTTGAGCAATAACATATTGAGTGGAAATATATGGCCCGAAATTGGTCAATTGAAAGCACTGCATGTCTTGGATTTAAGCAGGAATAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGGAGAACTTGGAAACCTTAGATTTGTCTTATAATGATCTTACTGGAGAAATTCCTTCATCATTTAACAACCTCACTTTCTTGTCAAAGTTCAGTGTGGCATATAATCGGTTAGAGGGATCAATTCCAACTGGGAATCAATTTTTAGGCTTCCCAAGTTCAAGCTTTGAGGGAAACCAAGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATTGTCAACAATACTAAGCCCATCAGTTCTTCCGGGTCTTCCAAAAAGCTTGGTAGAAGCAATGTCCTTGGCATAACTATAAGTATAGGGATAGGGCTTGCACTGCTTCTTGCATTTATTTTGCTAAGAATGTCAAGGAGGGATGATGATAAGCCCATCGACAACTATGATGAGGAACTCAATAGCAGGCCACACAGGTTATCCGAGGCACTTGTTTCGTCAAAGTTGGTTCTTTTCCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACAAAAGCAGCTATCAAGAGACTTTCAGGTGACTGTGGTCAGATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGATATTGTCGGCATGGCAATGACAGACTGTTAATATACTCGTACTTGGAGAATGGAAGCTTGGATTATTGGCTGCATGAGTGCGTGGATGAAAGCGCAGCTCTAAAATGGGATGCAAGACTGAAGATTGCACAAGGTGCTGCACGTGGATTAGCTTACTTGCATAAGGGTTGTGAACCATTCATAGTGCATCGTGATGTTAAATCCAGCAACATTCTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCACGACTACTTCAACCATATGACACTCATGTGACAACTGACTTGGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTCAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTAACAGGTAGAAGACCTGTGGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTTTCTTGGGTGTTCCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCATAAGGATCATGAGAAACAGCTACTAGAGGTGTTTGCCATTGCTTGTAAATGTCTAGACCAAGATCCTAGGCAGAGACCCGCTATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTCTCATCAGTGA 3165 0.4177 MVLLRCFSMTLLQWCFLACLVCLSLGLNNNQAPCDPHDLSALKKFAGELTSGSIIAAWSNDSVCCNWRGVVCDNVTGGGGTVTSRVTKLILPEMGLNGTISPSLAQLDQLSVLNLSLNHLKGGLPVEFSQLKLLKFLDVSHNMLSGPVAGALSGLQSIEVLNISSNSLSGVLFPFGEFPLLHALNVSNNSFTGGFNSQICSATKELHTLDLSANNFIGGLEGLDNCTASLQRLHLDSNSFTGPLPDSLYSMSALEELSVSSNNISGQLSKQLSKLSNLKILVLCGNRFSGELPNVFGNLLQLEELEAHGNSFSGSLPSTLASCSKLRVLNLRNNSFSGPIGLNFTGLSNLQTLDLATNHFTGHLPTSLSFCRELKVLSLARNGLTGSIPENYANLSSLLFVSFSNNSIENLSRAVSVLQQCKNLTTLILTKNFHGEEIRESTIVGFESLMILALGNCGLKGHIPSWLSNCRKLAVLDLSWNRLNGSVPSWIGQMDSLFYMDFSNNSLTGEIPKSLTELKGLMCANCNRENLAAFAFIPLFVKRNTSASGLQYNQASSFPPSIYLSNNILSGNIWPEIGQLKALHVLDLSRNNITGTIPSTISEMENLETLDLSYNDLTGEIPSSFNNLTFLSKFSVAYNRLEGSIPTGNQFLGFPSSSFEGNQGLCREIDSPCKIVNNTKPISSSGSSKKLGRSNVLGITISIGIGLALLLAFILLRMSRRDDDKPIDNYDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDESAALKWDARLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWHKDHEKQLLEVFAIACKCLDQDPRQRPAIEVVVSWLDSVRFDGSHQ* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2857 1054 ProSitePatterns Protein kinases ATP-binding region signature. 779 801 IPR017441 GO:0005524
Vra5g2857 1054 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Vra5g2857 1054 ProSiteProfiles Protein kinase domain profile. 773 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2857 1054 SUPERFAMILY Protein kinase-like (PK-like) 755 1044 IPR011009 -
Vra5g2857 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 563 620 - -
Vra5g2857 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 618 1047 - -
Vra5g2857 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 175 284 - -
Vra5g2857 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 285 439 - -
Vra5g2857 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 444 513 - -
Vra5g2857 1054 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 165 - -
Vra5g2857 1054 SUPERFAMILY L domain-like 33 314 - -
Vra5g2857 1054 Gene3D Ribonuclease Inhibitor 33 264 IPR032675 -
Vra5g2857 1054 PRINTS Leucine-rich repeat signature 583 596 - -
Vra5g2857 1054 PRINTS Leucine-rich repeat signature 604 617 - -
Vra5g2857 1054 Gene3D Transferase(Phosphotransferase) domain 1 849 1050 - -
Vra5g2857 1054 Gene3D Ribonuclease Inhibitor 371 677 IPR032675 -
Vra5g2857 1054 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Vra5g2857 1054 Pfam Leucine rich repeat 423 483 IPR001611 GO:0005515
Vra5g2857 1054 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Vra5g2857 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Vra5g2857 1054 SMART LRR_typ_2 107 130 IPR003591 -
Vra5g2857 1054 SMART LRR_typ_2 131 154 IPR003591 -
Vra5g2857 1054 SMART LRR_typ_2 251 274 IPR003591 -
Vra5g2857 1054 SMART LRR_typ_2 604 627 IPR003591 -
Vra5g2857 1054 SMART LRR_typ_2 347 371 IPR003591 -
Vra5g2857 1054 SMART LRR_typ_2 275 298 IPR003591 -
Vra5g2857 1054 SMART LRR_typ_2 580 603 IPR003591 -
Vra5g2857 1054 SMART LRR_typ_2 395 418 IPR003591 -
Vra5g2857 1054 Gene3D Ribonuclease Inhibitor 265 368 IPR032675 -
Vra5g2857 1054 ProSiteProfiles Leucine-rich repeat profile. 205 227 IPR001611 GO:0005515
Vra5g2857 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 618 1047 - -
Vra5g2857 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 175 284 - -
Vra5g2857 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 165 - -
Vra5g2857 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 285 439 - -
Vra5g2857 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 563 620 - -
Vra5g2857 1054 PANTHER PHYTOSULFOKINE RECEPTOR 2 444 513 - -
Vra5g2857 1054 Pfam Protein kinase domain 774 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2857 1054 SUPERFAMILY L domain-like 240 651 - -
Vra5g2857 1054 CDD STKc_IRAK 779 1045 - -
Vra5g2857 1054 Gene3D Phosphorylase Kinase; domain 1 736 848 - -
Vra5g2857 1054 SMART serkin_6 773 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2857 1054 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2857 Vra-Chr5 36694471 36698893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2857 39 1050 Receptor kinase-like Gene Family AT1G55610 34.489 1.14e-166 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vra5g2857 Pkinase 8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2857 - - gmx:100797812 1835.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2857 5 36694471 36698893 Vra5g2857 5 36694471 36698893 ECH