Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2856 ATGCAAGAAGCAAATAAATTTTATTCAGACTATGGAAAAAGATGTGGTTTTGGCATACAAACAAGAACTTCTAAAAAAGACGACAATAACGAAGAGTTAAGATTGGTTTGTTCAAGGGAAGGTAAATATGTTTCGAGCATTCGTCCAGAAGTGAAAACTCTGCCCAGTCAGACTAATCAATGCCCTGCTGGAGTAACAATTACCCGTAAAGATGACAAATGGTTTGTAAGGATTGTAGTTCTAGACCATAATCATGAGCTTTGTCCACAAACCTCAAATCTAATTCGTGCCAATAGAAAATTGAACATGCATGCGAAGCACACATTGGAAGTGAATGATGATGTGGATGTGCGCATTAATAAGAGTTTTCTTAGCATGGTTGGTGAAGCTGGTGGATATGAAAATATGCAATTTATGGAGCGAGATGCTAGGAACTTCATCGGTCAACATAGAAGATCACTGTGTAAGGAGGGTGATAGTCAAGTGCTGCTACGTCACTTTTAA 504 0.3829 MQEANKFYSDYGKRCGFGIQTRTSKKDDNNEELRLVCSREGKYVSSIRPEVKTLPSQTNQCPAGVTITRKDDKWFVRIVVLDHNHELCPQTSNLIRANRKLNMHAKHTLEVNDDVDVRINKSFLSMVGEAGGYENMQFMERDARNFIGQHRRSLCKEGDSQVLLRHF* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2856 167 Pfam FAR1 DNA-binding domain 6 88 IPR004330 -
Vra5g2856 167 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 2 99 - -
Vra5g2856 167 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2856 Vra-Chr5 36669277 36669780 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra5g2856 FAR1 1.4e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2856 - - vra:106760690 346.28