Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2853 ATGGAGATCAAGAGTACAGACAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAATCCGATTGAAGTAGAAGATGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGCGGTGAGGGCTGTCTTGCAGAAGATGAGAGGAAGAAGGGTGGTGCAGGTGGTGGGAGAAGAGGCTCTACTGGAGGTGGAGTTTCTCCACCTTCTTGTCAAGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTTTGTGATGGTTGCAGGAATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGACGAAGCAAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAATGAACGGCGCCGGAAGAGCAATGCTGAGACTTGTAATGAAGGATGCAGCAGCAGCAAAGGACAGCACCCTACAGAAAGCCTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCCACTTCAGATGA 573 0.5044 MEIKSTDRRQVSIEKVRRDNPIEVEDEEEEEDESVAGGEGCLAEDERKKGGAGGGRRGSTGGGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSSSKGQHPTESLCRNADDWGRIQMNMARNSGYRSFHFR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2853 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13 190 - -
Vra5g2853 190 Pfam SBP domain 69 142 IPR004333 GO:0003677
Vra5g2853 190 MobiDBLite consensus disorder prediction 23 39 - -
Vra5g2853 190 MobiDBLite consensus disorder prediction 144 163 - -
Vra5g2853 190 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Vra5g2853 190 Coils Coil 119 139 - -
Vra5g2853 190 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Vra5g2853 190 MobiDBLite consensus disorder prediction 1 68 - -
Vra5g2853 190 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Vra5g2853 190 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g2853 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 190 IPR044817 GO:0003677
Vra5g2853 190 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2853 Vra-Chr5 36619805 36622403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2853 55 147 SBP-box Gene Family AT1G53160 66.667 5.72e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra5g2853 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2853 - - gmx:100815775 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2853 5 36619805 36622403 Vra10g1299 10 18374952 18376934 ECH
Vra5g2853 5 36619805 36622403 Vra5g2853 5 36619805 36622403 ECH