Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra5g2852 | ATGACCACCAGAGAAATCCTTAACAAGATGAAGGTAAAAGTTGGTTTGGGTTCATCAGACCCTGATTCAGGGAAAGGCAAGAGCAAGATGTCGAAGAATATAACTCATGGCTTTCACTTGGTAAAAGGAAAATCATACCATGACATGGAGGATTATGTTGTTGCTCAATTTAAGCAAGTAGATAGCAATGAATTGGGTTTGTTTGCAATATTTGATGGACACGCAGGTCATAATGTACCTAATTACCTACAGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGAAAGAACCTGCAGATGCTGTCAAGAGAGCTTACAGTAAAACTGATTCTAATATTTTAGAGATGTCGGGTGAATTAGGTAGAGGAGGTTCAACTGCAGTTACAGCCATATTAGTCAATTGTCAGAAGTTAATAGTAGCCAACATTGGGGATTCCAGGGCTGTCTTATGCAAGAAGGGTGTGGCCAAACAATTATCAGTGGATCATGAGCCAAACACGGAGCATGAAGATATAAAAAATAGAGGTGGTTTTGTATCAAACTTTCCAGGGGATGTTCCACGGGTTGATGGACGGCTGGCTGTGTCAAGGGCTTTTGGTGACAAAAGCCTGAAGAAACATTTGAGTTCAGAGCCATTTGTGACAGTGGAGAATATAAATGATGATGCAGAATTCATTATATTAGCCAGTGATGGATTATGGAAGGTCATGTCAAATCAAGAAGCAGTTAATTGTATCAAAAATATAAAGGATGCTCGGTCTTCAGCAAAGCGCCTTACCGAAGAAGCAGTTAACAAGAAAAGCACTGATGATATCTCGTGTATTGTTGTCAAATTTCAGTGA | 852 | 0.3932 | MTTREILNKMKVKVGLGSSDPDSGKGKSKMSKNITHGFHLVKGKSYHDMEDYVVAQFKQVDSNELGLFAIFDGHAGHNVPNYLQSHLFDNILKEPDFWKEPADAVKRAYSKTDSNILEMSGELGRGGSTAVTAILVNCQKLIVANIGDSRAVLCKKGVAKQLSVDHEPNTEHEDIKNRGGFVSNFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPFVTVENINDDAEFIILASDGLWKVMSNQEAVNCIKNIKDARSSAKRLTEEAVNKKSTDDISCIVVKFQ* | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra5g2852 | 283 | Pfam | Protein phosphatase 2C | 48 | 275 | IPR001932 | - | |
| Vra5g2852 | 283 | Gene3D | - | 17 | 283 | IPR036457 | - | |
| Vra5g2852 | 283 | CDD | PP2Cc | 36 | 282 | IPR001932 | - | |
| Vra5g2852 | 283 | SUPERFAMILY | PP2C-like | 31 | 282 | IPR036457 | - | |
| Vra5g2852 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 1 | 283 | - | - | |
| Vra5g2852 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 35 | 282 | IPR001932 | - | |
| Vra5g2852 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 283 | IPR015655 | GO:0004722|GO:0006470 | |
| Vra5g2852 | 283 | SMART | PP2C_4 | 25 | 280 | IPR001932 | - | |
| Vra5g2852 | 283 | ProSitePatterns | PPM-type phosphatase domain signature. | 67 | 75 | IPR000222 | GO:0043169 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra5g2852 | Vra-Chr5 | 36616643 | 36619516 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra5g2852 | 1 | 283 | PP2C-type Phosphatase Gene Family | AT3G15260 | 74.048 | 3.35e-160 | 445 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra5g2852 | K17506 | - | gmx:100815245 | 531.561 |
Event-related genes