Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2850 ATGGTGGGCTCAGGAGCATCAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCACGAGGCCCTCAAAAGGGTGTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCGAGAGTTCGAGGTGGTAATGGCTGCAAGGTTGGAGATGACAACGGTAGCTTGATGTTGATGTGGGAAGATGGTTTCTGCCGAGGAAGTGTTGATGGAGAGGATCCTGTGAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCTACAGAATGTGAACCGAATATCTCCAACTATTGGCAGAGTTCATTTGATGCTCTTCCTCCTGAGTGGACAGACCAGTTTGAGTCAGGCATTCAGACCATAGCTGTAATTCAAGCTGGGCATGGCCTTCTCCAACTTGGTTCTTGCAAGATTATTCCTGAAGACCTTCATTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCCCAACTCTTTTCTTCAACAAGGAACACTTCCTCTTCTACTTCTGTTCCTTCAAAACCATCTAGCATTCCAGTTAGGCCACCTCCACTCTTCAACTGGGGTCAGAGGCCACTCACTTCTGCCACTTCCATGCTATCTTCACCTAATTTTCAACAACATGCAGCTAGACTTGGGTTCCCTAAAGATGAGGCAAACATGTTTCTGATTCCTCATGCATCATCTGAGAGTGCAAGAGTGGAGGACATGATGGGGGAGCATGAAAACGACATAAAATGGCCCAATGGCTTGTCTTTCTTCAATGCTCTCACCGGAAGAACAGATGATGCTAAGCTGTTGTTCAACCCTGATACATTGGGGAACAAACCAGGTGATCAAACTCAGCATCACCCTCTTACTCAAAATCCCAATTCAGATGGCTCCAACATGCAGAATGCTAATGCAACCAACCCAAATGAGTTCTTGAGCTTGGATAACAACCAAGATGATGCAAGGAAAATGGACAAGTTCAAGAGAAGCTTCACTCTACCTGCAAGAGTAGCCTCATCATCTTCATCCACTTCAATGGATCACCATCAAACACAAGGTGTGCAGTTTAGGAATTCAGAAGGAGCTATGTACCCGGATGTCATGGAAACCTTTTTGGAGTGA 1221 0.457 MVGSGASDRSKEAVGMMALHEALKRVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGSVDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSVPSKPSSIPVRPPPLFNWGQRPLTSATSMLSSPNFQQHAARLGFPKDEANMFLIPHASSESARVEDMMGEHENDIKWPNGLSFFNALTGRTDDAKLLFNPDTLGNKPGDQTQHHPLTQNPNSDGSNMQNANATNPNEFLSLDNNQDDARKMDKFKRSFTLPARVASSSSSTSMDHHQTQGVQFRNSEGAMYPDVMETFLE* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2850 406 MobiDBLite consensus disorder prediction 310 348 - -
Vra5g2850 406 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 75 IPR025610 -
Vra5g2850 406 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 81 180 IPR025610 -
Vra5g2850 406 PANTHER GB|AAF34833.1 1 406 IPR044170 -
Vra5g2850 406 MobiDBLite consensus disorder prediction 201 220 - -
Vra5g2850 406 MobiDBLite consensus disorder prediction 304 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2850 Vra-Chr5 36594849 36597536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2850 20 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 33.728 1.45e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2850 - - gmx:100814723 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2850 5 36594849 36597536 Vra5g2850 5 36594849 36597536 ECH