Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2849 ATGGCTGACGTGGCAGGTCTAGTTGAGGCAGCGGGATCGAGATTCACTTCATTGGAGCTTATTGGGCAGGGATCGTTTGGAGACGTCTATAAAGCGTTTGATAAGGAGCTCAACAAAGAAGTCGCCATCAAAGTGATTGACTTGGAAGAATCGGAGGATGAAATTGATGATATCCAGAAGGAAATTTCTGTTTTGTCTCAATGTCGATGCCCATACATTACTGAGTATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGTGGTTCAGTTGCTGATCTACTCCAAGCAGGTAATCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATCTACACACTGAAGGGAAAATTCACAGAGACCTTAAAGCTGCAAACATTTTATTGTCTGAGAATGGTGATGTAAAGGTAGCAGATTTTGGCGTTTCTGCACAGTTAACAAGGACTATATCAAGGAGGAAGACATTTGTAGGAACGCCATTTTGGATGGCACCTGAGGTTATTCAGAATACTGATGGATATAATGAGAAGGCAGATATTTGGTCTTTGGGAATCACTGCTATTGAGATGGCAAAGGGGGAGCCTCCATTAGCGGATCTTCACCCTATGAGAGTGCTTTTCATCATACCTCGGGAGAATCCTCCGCAGCTAGATGATCATTTTTCCCGTCCAATGAAAGAATTTGTCTCATTGTGCTTAAAGAAGGTTCCTGCCGAGAGGCCAAGTGCTAAGGAACTTTTGAAGGACCGTTTTATTCGGAATGCTAGGAGGAGTTCAAAGCTTGCAGAAAGAATAAGAGAACGTCCAAAATATCAAATAAAGGAAGAAGATCTGGAAACACCTAGAAATGTCTCAAGAGGGATAGGGGAAGGATCAGATACTGTAAAAGTGGCTAGAGATGTAAGAGGTGAAGAAAATAATCGACCCAGTGATCAGGGTAAAACCCTGAAAAGTGCTGGATGGGATTTCAATATTGGTGGATCACAGGGTACTGGAACCTTTCGTAATGTTTCTCGACCACCTCAATTTAGAGAGAAGAAAGCTGAAGCATCACATAATCAGGGAACCCAAAGAAAAGCTCCTGAGAGTGGTTATCAAGGGGGATCTGCTAATAGAAGGGCACTTAGTGAATCACTTGAAAGTTCCTCTGGAAGAGATCGAGTTTCCCACCATGATGAGCATCTGGACAATCACACTGAAGATGATGAATTATCCGGAAATGGATCAGGAACTATTGTTATTCGATCTCCAAAAGGGTCTAGGTCATCTATATTCGGTGACCAGAGCTCTCAATATAGTAGCAGATATTCTTCTTTCGATGATGCCTCTACAAGTGGGACTGTTGTTTTACGTGGCCAGCATGATGAGCCTGATTCTCCACAGCCACTAAGGTCTCGACTTGGACTAAATGACAGAAATTCAAATTCCTCAATGGAAGACAGTGCGGCAAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGAGGGCTCAGGAAAGTGGGTTCTCGAGAAAGATTGGCCCGAGGAAAAATCAACAATGACAGACAGGAAGACAAGAAAGATGGAAAGGCAAGCAGCTTTGACTCTTCAAGGGGCTTGTCAAGATCACATCATGCTAATAATGATGAAGGAAGTACTAAAATAATGCTATCCTCAGTGCCATTATCTGCTTTACTTGTTCCTTCTTTAAAAGAGGCCATTGCTGATGATCCAGAAGGAGCAGTTGTGCGGGCAGTTATCAATTCTTTAATAAACATGGAGGGCTCAAAACCTAACTCCTGTGAAGCTCTTCTCAAACAGTTGCTTCAGCGATTGGCAAGTTCAAAGGAAGATTCATTGAAGGACCTGCAGCGGCTAGCAGGGGAACTATTCAGCAAGACCAAGTCCACCGAAGAAACCCGAAATGCACTGGCTGATAACAGGAAAAAACAACAAAACAAGGAACATAATCCTAATAGCAATTTAAGTCCACTAGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACATCACGAGATCTAAACTCATCTTGA 2076 0.4258 MADVAGLVEAAGSRFTSLELIGQGSFGDVYKAFDKELNKEVAIKVIDLEESEDEIDDIQKEISVLSQCRCPYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQAGNPLDEMSIACILRDLLHAVDYLHTEGKIHRDLKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDDHFSRPMKEFVSLCLKKVPAERPSAKELLKDRFIRNARRSSKLAERIRERPKYQIKEEDLETPRNVSRGIGEGSDTVKVARDVRGEENNRPSDQGKTLKSAGWDFNIGGSQGTGTFRNVSRPPQFREKKAEASHNQGTQRKAPESGYQGGSANRRALSESLESSSGRDRVSHHDEHLDNHTEDDELSGNGSGTIVIRSPKGSRSSIFGDQSSQYSSRYSSFDDASTSGTVVLRGQHDEPDSPQPLRSRLGLNDRNSNSSMEDSAANLAEAKAAIQGGLRKVGSRERLARGKINNDRQEDKKDGKASSFDSSRGLSRSHHANNDEGSTKIMLSSVPLSALLVPSLKEAIADDPEGAVVRAVINSLINMEGSKPNSCEALLKQLLQRLASSKEDSLKDLQRLAGELFSKTKSTEETRNALADNRKKQQNKEHNPNSNLSPLARFLLSRWQGQTSRDLNSS* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2849 691 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vra5g2849 691 MobiDBLite consensus disorder prediction 337 353 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 394 418 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 481 497 - -
Vra5g2849 691 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2849 691 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 689 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 514 559 - -
Vra5g2849 691 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2849 691 CDD STKc_MST3_like 13 287 - -
Vra5g2849 691 SUPERFAMILY Protein kinase-like (PK-like) 12 289 IPR011009 -
Vra5g2849 691 MobiDBLite consensus disorder prediction 515 540 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 369 393 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 641 662 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 419 465 - -
Vra5g2849 691 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 689 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 308 326 - -
Vra5g2849 691 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 641 673 - -
Vra5g2849 691 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2849 691 Coils Coil 613 633 - -
Vra5g2849 691 MobiDBLite consensus disorder prediction 287 497 - -
Vra5g2849 691 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2849 Vra-Chr5 36511629 36530489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2849 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 64.245 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vra5g2849 Pkinase 5.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2849 K08838 - gmx:100815042 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2849 5 36511629 36530489 Vra5g2849 5 36511629 36530489 ECH